Table 7.

The location of the most significantly dimorphic SNPs, limited to the top 5, which were associated with the skeletal traits in the HE

							Male		Female
Trait1	Chr	Start	End	No. ofdimorphic SNPs	Most significantly dimorphic SNP	Updated position of most significantly dimorphic SNP (ARS-UCD 1.2)	Allele frequency	Allele effect (SE)	Allele frequency	Allele effect (SE)	Significance of dimorphism
WH	1	1,925,823	2,922,535	2	2,422,535b	3,142,926	0.010	0.63 (0.20)	0.009	−0.99 (0.27)	1.22 × 10−6
	10	49,372,889	50,457,497	10	49,872,889b	49,812,963	0.004	−1.27 (0.30)	0.006	0.83 (0.31)	1.18 × 10−6
	10	68,414,747	69,451,655	11	68,933,579b	68,686,530	0.107	0.27 (0.06)	0.137	−0.20 (0.07)	5.97 × 10−7
	16	916,164	1,945,553	12	14,41,711c	1,624,685	0.025	−0.36 (0.13)	0.016	0.78 (0.20)	1.05 × 10−6
	24	10,954,731	11,969,624	6	11,461,076a	11,159,461	0.096	−0.27 (0.06)	0.067	0.29 (0.09)	2.65 × 10−7
BL	4	12,086,873	13,087,742	3	12,587,742a	12,740,501	0.008	−0.90 (0.24)	0.005	1.22 (0.39)	3.37 × 10−6
	8	25,464,831	26,824,440	23	25,966,773a	25,943,096	0.110	0.32 (0.07)	0.132	−0.23 (0.08)	3.56 × 10−7
	14	30,747,311	31,768,991	12	31,247,311a	29,553,248	0.461	0.14 (0.04)	0.471	−0.20 (0.06)	1.38 × 10−6
	25	13,061,095	14,195,964	4	13,561,095b	*	0.003	−1.27 (0.36)	0.012	0.75 (0.24)	3.63 × 10−6
	28	32,468,295	34,072,536	3	33,572,536b	33,371,736	0.146	−0.10 (0.06)	0.148	0.37 (0.09)	3.18 × 10−6
HW	5	75,173,455	76,244,035	40	75,719,616a	75,344,242	0.006	−0.73 (0.28)	0.004	1.85 (0.44)	8.46 × 10−7
	11	88,093,610	89,599,089	7	89,005,217a	89,030,779	0.263	−0.13 (0.06)	0.195	0.40 (0.09)	8.95 × 10−7
	12	82,288,642	83,293,488	3	82,793,488a	78,806,868	0.155	−0.17 (0.06)	0.208	0.29 (0.07)	3.07 × 10−7
	23	51,480,640	52,527,183	5	52,013,801b	52,167,774	0.089	−0.16 (0.08)	0.091	0.46 (0.10)	3.27 × 10−7
	27	8,148,686	10,276,462	17	86,48,686a	9,657,276	0.107	−0.24 (0.06)	0.106	0.30 (0.09)	5.65 × 10−7
CW	1	62,368,829	63,399,292	5	62,868,829a	62,264,629	0.082	−0.22 (0.06)	0.108	0.32 (0.08)	5.58 × 10−8
	5	49,311,974	50,341,913	23	49,822,014b	49,592,445	0.428	−0.17 (0.04)	0.384	0.13 (0.05)	5.20 × 10−7
	6	41,424,236	42,580,067	9	42,029,809b	40,571,631	0.003	1.31 (0.31)	0.005	−1.13 (0.33)	7.10 × 10−8
	9	31,485,678	32,498,136	4	31,985,678a	31,570,153	0.010	0.42 (0.19)	0.004	−1.78 (0.38)	2.34 × 10−7
	13	2,019,339	3,201,947	16	2,522,257d	2,613,918	0.066	0.10 (0.07)	0.030	−0.67 (0.13)	1.94 × 10−7
CD	10	2,981,982	4,121,382	3	3,621,377a	3,672,531	0.008	0.11 (0.19)	0.002	2.49 (0.48)	3.42 × 10−6
	11	67,322,056	68,784,534	4	68,278,582d	68,305,651	0.003	−0.87 (0.32)	0.002	2.05 (0.48)	4.15 × 10−7
	16	9,638,392	10,667,968	6	10,150,979a	95,50,179	0.044	−0.24 (0.08)	0.040	0.46 (0.13)	3.62 × 10−6
	19	42,220,630	43,244,434	32	42,738,845d	42,096,896	0.349	0.11 (0.03)	0.322	−0.20 (0.06)	2.67 × 10−6
	22	25,263,617	26,332,810	15	25,767,332a	25,654,951	0.054	−0.15 (0.07)	0.050	0.49 (0.11)	7.27 × 10−7

¹WH, wither height; BL, back lenght; HW, hip width; CW, chest width; CD, chest depth.

^aIntergenic variant.

^bIntron variant.

^cDownstream gene variant.

^dUpstream gene variant.

*SNP has not been mapped on the latest build.