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. 2021 Sep 30;37(3):109841. doi: 10.1016/j.celrep.2021.109841
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse anti-GFP Clontech Cat# 632381; RRID: AB_2313808
Rabbit anti-Vinculin Abcam Cat# GR268234-50; RRID: AB_2241513
Mouse anti-FLAG M2 Sigma-Aldrich Cat# SLBT654; RRID:AB_262044
Rabbit anti-RPS2 Bethyl labs Cat# A303-794A-M; RRID:AB_2781471
Rabbit anit-RPS3 Proteintech Cat# 11990-1-AP; RRID:AB_2180758
Rabbit anti-RPS24 Bethyl labs Cat# A303-545A; RRID:AB_2620193
Rabbit anit-RACK1 Bethyl labs Cat# A302-545A; RRID:AB_1999012
Rabbit anit-FLAG M2 (magnetic beads) Sigma-Aldrich Cat# M8823-5mL; RRID:AB_2637089
HRP goat anit-mouse IgG SouthernBiotech Cat# 1031-05; RRID:AB_2794307
HRP goat anti-rabbit IgG SouthernBiotech Cat# 4030-05; RRID:AB_2687483

Enzymes

EcoRI New England Biolabs R3101S (10,000U)
In-Fusion® snap assembly (master mix) Clontech (TaKaRa) 638943
TURBO DNase Invitrogen AM2239 (5,000U)
AMV Reverse Transcriptase Promega M5101 (300U)
SuperScript IV RT ThermoFisher 18090050 (10,000U)
PreScission protease Cytiva 27084301
T7 RNA polymerase New England Biolabs M0251L (25,000U)
2′-O-Methyltransferase New England Biolabs M0366S (50,000U)
Vaccinia D1/D2 (Capping enzyme) New England Biolabs M2080S (400U)

Cell lines

BL21-CondonPlus (DE3)-RIPL Agilent 230240
HEK293T cells UC, Berkeley TC Core N/A
HELA cells UC, Berkeley TC Core N/A

Chemicals, peptides, and recombinant proteins

Overnight ExpressTM instant TB medium Novagen 71300-4
cOmpleteTM, EDTA-free protease inhibitor cocktail Roche 5056489001
Halt Protease and Phosphatase inhibitor single-use ThermoFisher 78444
Trichloroacetic acid (TCA) Sigma-Aldrich T0699-100ML
3XFLAG peptide Sigma-Aldrich F4799-4MG
TRIzol Reagent ThermoFisher 15596026
GMP-PNP trisodium salt hydrate Sigma-Aldrich G0635-5MG
Cycloheximide (CHX) Sigma-Aldrich C4859-1ML
Glutathione Sepharose 4 (fast flow) Cytiva 17513202
Kaposi’s sarcoma associated herpesvirus (ORF37) This lab PMID: 30321376
TAMRA maleimide, 6-isomer Lumiprobe life science 28180 (5mg)
Murine RNase inhibitor New England Biolabs M0312L (15,000U)
Actinomycin D Sigma-Aldrich A1410-5MG
SUPERase⋅In RNase inhibitor Invitrogen AM2696 (10,00U)

Critical commercial assays

PolyJet (transfection reagent) SignaGen® Labs SL100688
Nano-Glo® Luciferase Assay kit Promega N1110
iTaq universal SYBR® green supermix Bio-Rad 1725121
Nuclease-treated rabbit reticulocyte lysate (RRL) Promega L4960

Oligonucleotides

Primers for qPCRs, primer extension assay, and cloning This paper See Table S1

Recombinant DNA

pCDNA4TO-3XFLAG Halo WT nsp1 This paper 175412 (Addgene)
pCDNA4TO-3XFLAG Halo R124A/K125A nsp1 This paper 175417 (Addgene)
pCDNA4TO-3XFLAG Halo K164A/H165A nsp1 This paper 175421 (Addgene)
pCDNA4TO-3XFLAG Halo R99A nsp1 This paper 175422 (Addgene)
pCDNA4TO-3XFLAG Halo delta 1-117 nsp1 This paper 175423 (Addgene)
pCDNA4TO-3XFLAG Halo delta 118-180 nsp1 This paper 175424 (Addgene)
pCDNA4TO-3XFLAG Halo delta 122-130 nsp1 This paper 175425 (Addgene)
pCDNA4TO-3XFLAG Halo G-Linker nsp1 This paper 175426 (Addgene)
pCDNA4TO-3XFLAG Halo E55A E57A K58A nsp1 This paper 175427 (Addgene)
pCDNA4TO-3XFLAG Halo R119A K120A nsp1 This paper 175428 (Addgene)
pCDNA4TO-3XFLAG Halo E36A E37A nsp1 This paper 175429 (Addgene)
pJP-CoV2leader-nLuc-TSS This paper 175430 (Addgene)
pJP-HBB-nLuc This paper 175431 (Addgene)
pUC57-HBB-nLuc This paper 175432 (Addgene)
pGEX nsp1 CoV2 This paper 175512 (Addgene)
pGEX nsp1 R124A/K125A CoV2 This paper 175513 (Addgene)
pGEX nsp1 K164A/H165A CoV2 This paper 175514 (Addgene)
pGEX nsp1 R99A CoV2 This paper 175515 (Addgene)
pGEX C_K nsp1 CoV2 This paper 175516 (Addgene)
pGEX C_K nsp1 K164A/H165A This paper 175517 (Addgene)
pUC Ad VAI This paper 175518 (Addgene)
pCDNA4 CoV-2 nsp1 3xFLAG This paper 176057 (Addgene)
pCDNA4TO R124A K125A CoV-2 nsp1 3xFLAG This paper 176059 (Addgene)
pCDNA4TO K164A H165A CoV-2 nsp1 3xFLAG This paper 176060 (Addgene)
pCDNA4TO R99A CoV-2 nsp1 3xFLAG This paper 176061 (Addgene)
Pd2EGFP-N1_plusSL This lab PMID: 22740404

Software and algorithms

GraphPad (Prism) This paper Version 9.2.0 (283)