| Antibodies |
|
| Mouse anti-GFP |
Clontech |
Cat# 632381; RRID: AB_2313808
|
| Rabbit anti-Vinculin |
Abcam |
Cat# GR268234-50; RRID: AB_2241513
|
| Mouse anti-FLAG M2 |
Sigma-Aldrich |
Cat# SLBT654; RRID:AB_262044
|
| Rabbit anti-RPS2 |
Bethyl labs |
Cat# A303-794A-M; RRID:AB_2781471
|
| Rabbit anit-RPS3 |
Proteintech |
Cat# 11990-1-AP; RRID:AB_2180758
|
| Rabbit anti-RPS24 |
Bethyl labs |
Cat# A303-545A; RRID:AB_2620193
|
| Rabbit anit-RACK1 |
Bethyl labs |
Cat# A302-545A; RRID:AB_1999012
|
| Rabbit anit-FLAG M2 (magnetic beads) |
Sigma-Aldrich |
Cat# M8823-5mL; RRID:AB_2637089
|
| HRP goat anit-mouse IgG |
SouthernBiotech |
Cat# 1031-05; RRID:AB_2794307
|
| HRP goat anti-rabbit IgG |
SouthernBiotech |
Cat# 4030-05; RRID:AB_2687483
|
|
| Enzymes |
|
| EcoRI |
New England Biolabs |
R3101S (10,000U) |
| In-Fusion® snap assembly (master mix) |
Clontech (TaKaRa) |
638943 |
| TURBO DNase |
Invitrogen |
AM2239 (5,000U) |
| AMV Reverse Transcriptase |
Promega |
M5101 (300U) |
| SuperScript IV RT |
ThermoFisher |
18090050 (10,000U) |
| PreScission protease |
Cytiva |
27084301 |
| T7 RNA polymerase |
New England Biolabs |
M0251L (25,000U) |
| 2′-O-Methyltransferase |
New England Biolabs |
M0366S (50,000U) |
| Vaccinia D1/D2 (Capping enzyme) |
New England Biolabs |
M2080S (400U) |
|
| Cell lines |
|
| BL21-CondonPlus (DE3)-RIPL |
Agilent |
230240 |
| HEK293T cells |
UC, Berkeley TC Core |
N/A |
| HELA cells |
UC, Berkeley TC Core |
N/A |
|
| Chemicals, peptides, and recombinant proteins |
|
| Overnight ExpressTM instant TB medium |
Novagen |
71300-4 |
| cOmpleteTM, EDTA-free protease inhibitor cocktail |
Roche |
5056489001 |
| Halt Protease and Phosphatase inhibitor single-use |
ThermoFisher |
78444 |
| Trichloroacetic acid (TCA) |
Sigma-Aldrich |
T0699-100ML |
| 3XFLAG peptide |
Sigma-Aldrich |
F4799-4MG |
| TRIzol Reagent |
ThermoFisher |
15596026 |
| GMP-PNP trisodium salt hydrate |
Sigma-Aldrich |
G0635-5MG |
| Cycloheximide (CHX) |
Sigma-Aldrich |
C4859-1ML |
| Glutathione Sepharose 4 (fast flow) |
Cytiva |
17513202 |
| Kaposi’s sarcoma associated herpesvirus (ORF37) |
This lab |
PMID: 30321376
|
| TAMRA maleimide, 6-isomer |
Lumiprobe life science |
28180 (5mg) |
| Murine RNase inhibitor |
New England Biolabs |
M0312L (15,000U) |
| Actinomycin D |
Sigma-Aldrich |
A1410-5MG |
| SUPERase⋅In RNase inhibitor |
Invitrogen |
AM2696 (10,00U) |
|
| Critical commercial assays |
|
| PolyJet (transfection reagent) |
SignaGen® Labs |
SL100688 |
| Nano-Glo® Luciferase Assay kit |
Promega |
N1110 |
| iTaq universal SYBR® green supermix |
Bio-Rad |
1725121 |
| Nuclease-treated rabbit reticulocyte lysate (RRL) |
Promega |
L4960 |
|
| Oligonucleotides |
|
| Primers for qPCRs, primer extension assay, and cloning |
This paper |
See Table S1
|
|
| Recombinant DNA |
|
| pCDNA4TO-3XFLAG Halo WT nsp1 |
This paper |
175412 (Addgene) |
| pCDNA4TO-3XFLAG Halo R124A/K125A nsp1 |
This paper |
175417 (Addgene) |
| pCDNA4TO-3XFLAG Halo K164A/H165A nsp1 |
This paper |
175421 (Addgene) |
| pCDNA4TO-3XFLAG Halo R99A nsp1 |
This paper |
175422 (Addgene) |
| pCDNA4TO-3XFLAG Halo delta 1-117 nsp1 |
This paper |
175423 (Addgene) |
| pCDNA4TO-3XFLAG Halo delta 118-180 nsp1 |
This paper |
175424 (Addgene) |
| pCDNA4TO-3XFLAG Halo delta 122-130 nsp1 |
This paper |
175425 (Addgene) |
| pCDNA4TO-3XFLAG Halo G-Linker nsp1 |
This paper |
175426 (Addgene) |
| pCDNA4TO-3XFLAG Halo E55A E57A K58A nsp1 |
This paper |
175427 (Addgene) |
| pCDNA4TO-3XFLAG Halo R119A K120A nsp1 |
This paper |
175428 (Addgene) |
| pCDNA4TO-3XFLAG Halo E36A E37A nsp1 |
This paper |
175429 (Addgene) |
| pJP-CoV2leader-nLuc-TSS |
This paper |
175430 (Addgene) |
| pJP-HBB-nLuc |
This paper |
175431 (Addgene) |
| pUC57-HBB-nLuc |
This paper |
175432 (Addgene) |
| pGEX nsp1 CoV2 |
This paper |
175512 (Addgene) |
| pGEX nsp1 R124A/K125A CoV2 |
This paper |
175513 (Addgene) |
| pGEX nsp1 K164A/H165A CoV2 |
This paper |
175514 (Addgene) |
| pGEX nsp1 R99A CoV2 |
This paper |
175515 (Addgene) |
| pGEX C_K nsp1 CoV2 |
This paper |
175516 (Addgene) |
| pGEX C_K nsp1 K164A/H165A |
This paper |
175517 (Addgene) |
| pUC Ad VAI |
This paper |
175518 (Addgene) |
| pCDNA4 CoV-2 nsp1 3xFLAG |
This paper |
176057 (Addgene) |
| pCDNA4TO R124A K125A CoV-2 nsp1 3xFLAG |
This paper |
176059 (Addgene) |
| pCDNA4TO K164A H165A CoV-2 nsp1 3xFLAG |
This paper |
176060 (Addgene) |
| pCDNA4TO R99A CoV-2 nsp1 3xFLAG |
This paper |
176061 (Addgene) |
| Pd2EGFP-N1_plusSL |
This lab |
PMID: 22740404
|
|
| Software and algorithms |
|
| GraphPad (Prism) |
This paper |
Version 9.2.0 (283) |