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Classification of SNPs from RNA-Seq included in the array, considering the annotation of 4093 SNPs from pacu and 294 SNPs from tambaqui.
| Category | Number of SNPs | |
|---|---|---|
| Pacu (%) | Tambaqui (%) | |
| Intergenic | 2047 (48.3) | 208 (69.8) |
| UTR 3′ prime | 1202 (28.4) | 17 (5.7) |
| UTR 5′ prime | 284 (6.7) | 14 (4.7) |
| Exon | ||
| Synonymous SNP | 490 (11.6) | 59 (19.8) |
| Missense SNP | 215 (5.0) | – |
| Total of effects | 4238 (100) | 298 (100) |
Percentage values are between parenthesis.
