Table 2.

Details of recombination events detected in the DRL-P1 complete genome.

Events	Breakpoint positions (99% CI)		Parental sequences most similar to RefSeq		Detection method
	Begin	End	Minor parent	Major parent	RDP	GENECONV	BOOTSCAN	MAXCHI	CHIMAERA	SISSCAN	3SEQ
1	*1–2508	27,450–27,676	NC_050150_antinowhere	NC_011810_PB1	NS	7.63E−05	1.39E−05	3.44E−03	NS	2.33E−11	NS
2	12,952–13,552	15,791–16,070	NC_048662_R12	NC_41902_PA5	3.87E−11	NS	9.28E−12	4.06E−14	5.68E−17	1.04E−21	NS
3	30,300–30,982	31,037–31,179	NC_028745_DL60	NC_050150_antinowhere	NS	6.07E−06	NS	2.13E−03	2.33E−04	9.07E−08	NS
4	34,741–34,864	35,766–36,483	NC_048744_EPa61	NC_007810_F8	2.17E−02	NS	4.30E−03	1.02E−09	7.24E−07	NS	7.76E−07
5	34,742–36,409	36,756–49,890	NC_048663_R26	NC-007810_F8	NS	4.52E−04	2.89E−06	3.05E−03	NS	NS	8.81E−05
6	37,757–39,593	40,875–41,707	NC_011810_PB1	NC_048744_EPa61	2.78E−03	4.94E−05	2.02E−02	7.31E−07	1.89E−05	5.20E−07	2.20E−19
7	40,875–41,089	41,394–41,482	NC_048745_SCUTS1	NC_050145_PaGU11	NS	4.24E−07	6.04E−18	5.99E−05	2.91E−04	2.45E−24	1.07E−06
8	42,697–42,783	49,313–50,275	NC_007810_F8	NC_050143_datas	1.81E−34	5.00E−59	3.02E−52	1.76E−22	3.73E−14	4.91E−33	1.32E−12
9	54,844–55,619	58,859–59,079	NC_048744_EPa61	NC_011810_PB1	4.78E−66	3.75E−88	1.38E−92	1.20E−37	1.13E−38	6.11E−48	NS
10	40,432–59,079	59,115–59,433	NC_041870_DP1	NC_050150_antinowhere	NS	3.31E−12	1.87E−12	2.63E−04	1.35E−04	NS	5.62E−11
11	59,386–59,605	59,938–60,186	NC_007810_F8	NC_019935_KPP12	5.51E−70	8.01E−73	1.85E−72	1.82E−13	6.12E−13	5.46E−24	5.62E−12
12	59,838–61,747	62,466–62,776	NC_028745_DL60	NC_007810_F8	NS	NS	2.87E−05	4.85E−09	1.85E−05	NS	3.74E−07

NS not significant.