TABLE 3.
The top ten differently expressed long non-coding RNAs (lncRNA) when comparing cells grown in either deep underground lab (DUGL) or above ground lab (AGL) conditions.
| Gene name | Log2 Fold Change | q value | Location |
| lncRNAs(known) | |||
| LOC100758509_2 | –5.66047 | 9.70E-04 | chrNW_020822486.1:23460034-23522380:– |
| LOC103164300_1 | –5.57904 | 3.51E-15 | chrNW_020822370.1:33495091-33507253: + |
| LOC113832378 | –5.21924 | 8.21E-11 | chrNW_020822375.1:15663217-15671664: + |
| LOC103161061_1 | –5.21393 | 6.48E-08 | chrNW_020822504.1:18823253-18824765:– |
| LOC103161316_1 | –5.12471 | 3.98E-04 | chrNW_020822486.1:5308869-5315709:– |
| LOC113831664_1 | –4.94432 | 0.00058 | chrNW_020822438.1:1600081-1613566: + |
| LOC113832854 | –4.92383 | 0.000751 | chrNW_020822410.1:19442721-19456112:– |
| LOC113831251_1 | –4.61109 | 0.007984 | chrNW_020822467.1:6547657-6558607: + |
| LOC103159255_1 | –4.50856 | 6.00E-03 | chrNW_020822439.1:67883834-67884417: + |
| LOC113836383_1 | –4.46703 | 0.000226 | chrNW_020822486.1:23460034-23522380:– |
| LOC103159465_1 | 2.296029 | 0.002938 | chrNW_020822423.1:371630-394726:– |
| LOC113835467_1 | 2.429808 | 0.01064 | chrNW_020822530.1:8081052-8097556: + |
| LOC113833966_1 | 2.499678 | 8.84E-07 | chrNW_020822455.1:921749-927513: + |
| LOC107978529_1 | 2.904763 | 0.004687 | chrNW_020822428.1:4670842-4673304: + |
| LOC113831863_1 | 3.12391 | 0.000136 | chrNW_020822603.1:3601354-3603135: + |
| LOC113831747_1 | 3.160932 | 1.45E-05 | chrNW_020822438.1:1535637-1537003: + |
| LOC107978696_1 | 3.258981 | 0.000472 | chrNW_020822455.1:931265-933279: + |
| LOC103163348_1 | 3.338026 | 0.003938 | chrNW_020822439.1:14659910-14663129: + |
| LOC107979141_1 | 3.352202 | 0.000255 | chrNW_020822398.1:20429447-20437433:– |
| LOC103159184_1 | 4.260327 | 0.049749 | chrNW_020822530.1:9998432-10003516: + |
| lncRNAs(novel) | |||
| MSTRG.59509 | –6.57576 | 1.78E-10 | chrNW_020822512.1:634352-636357: + |
| MSTRG.99600 | –5.94264 | 1.22E-06 | chrNW_020822619.1:2009350-2011797:– |
| MSTRG.21797 | –5.93371 | 5.52E-07 | chrNW_020822434.1:7402469-7414938: + |
| MSTRG.59508 | –5.91585 | 2.43E-07 | chrNW_020822512.1:618300-619177: + |
| MSTRG.44365 | –5.89489 | 5.71E-07 | chrNW_020822470.1:1277837-1279286: + |
| MSTRG.73727 | –5.19106 | 0.000524 | chrNW_020822559.1:236775-237739: + |
| MSTRG.47206 | –5.17038 | 0.000402 | chrNW_020822486.1:7934576-7936189: + |
| MSTRG.43863 | –4.99667 | 0.000764 | chrNW_020822468.1:45577419-45667919: + |
| MSTRG.50794 | –4.98006 | 9.33E-07 | chrNW_020822499.1:13398936-13400447:– |
| MSTRG.58014 | –4.88975 | 0.002297 | chrNW_020822507.1:14635785-14637831: + |
| MSTRG.91028 | 15.2715 | 0.006013 | chrNW_020822608.1:5014765-5015598: + |
| MSTRG.112540 | 15.59807 | 0.03954 | chrNW_020824056.1:4400-15732:– |
| MSTRG.68271 | 15.66354 | 0.034379 | chrNW_020822532.1:98526-103809: + |
| MSTRG.59078 | 17.08523 | 0.0392 | chrNW_020822511.1:1720903-1722420:– |
| MSTRG.83322 | 17.52892 | 0.048776 | chrNW_020822601.1:1989261-1992807:– |
| MSTRG.104440 | 18.57067 | 0.001559 | chrNW_020822644.1:302166-335565: + |
| MSTRG.110568 | 22.61577 | 0.017883 | chrNW_020822701.1:6834752-6835186:– |
| MSTRG.91073 | 27.94233 | 0.002157 | chrNW_020822608.1:5763552-5787063:– |
| MSTRG.47671 | 28.07458 | 0.002935 | chrNW_020822486.1:21390271-21392110: + |
| MSTRG.62292 | 32.01071 | 0.005257 | chrNW_020822520.1:3275391-3277354: + |