TABLE 2.
Primer sequences and PCR conditions for genotyping experiments.
Genetic polymorphism | Primer sequence | Tm | Annealing temperature | PCR product size (bp) |
FADS1 (rs174556) | Forward inner primer (C allele): | 62.5°C | 57°C | 189 (C allele) |
5′- ACTGACTGTGATTACTATGACTGTGCTC-3′ | ||||
Reverse inner primer (T allele): | 62.5°C | 268 (T allele) | ||
5′-ATGGGTGGAAGGAGAGTCTAGATTGA-3′ | ||||
Forward outer: | 62.5°C | 404 (two outer primers) | ||
5′-TGAGCCTGTTATCTCATCTGTAAATGTGT-3′ | ||||
Reverse outer: | 62.5°C | |||
5′-GGGCCTTGTGAAGAAGTATATGAACTCT-3′ | ||||
FADS2 (rs99780) | Forward inner primer (T allele): | 65°C | 59°C | 218 (T allele) |
5′-AATATTAACATGGGAAAAACCGCCCCGT-3′ | ||||
Reverse inner primer (C allele): | 66°C | 297 (C allele) | ||
5′-AATATATGGAGCGTGGGAACCCGAGATG-3′ | ||||
Forward outer: | 65°C | 460 (two outer primers) | ||
5′-TAATATAGGTTTGTCTGGAGGCAGGGACTC-3′ | ||||
Reverse outer: | 64.5°C | |||
5′-ATATTATAGACGGACCTGTTGCCAAGCC-3′ | ||||
FADS3 (rs7115739) | Forward inner (T allele): | 63°C | 61°C | 152 (T allele) |
5′-TATACCCGATCTTGGGCCTGATATTAGT-3′ | ||||
Reverse inner (G allele): | 63.5°C | 260 (G allele) | ||
5′-TATTATTGACATTTCTGGCTCCACCGC-3′ | ||||
Forward outer: | 64°C | 358 (two outer primers) | ||
5′-TAATGTGGGTTGGGAGAACAGCTGAA-3′ | ||||
Reverse outer: | 63.5°C | |||
5′-ATGTACACTTCTCCTTCATGATCTCTCCC-3′ |