Table 3.
Summary of an indicator species analysis.
| Assoc. | p-value | Closest related species | Accession | Identity [%] | C | GS | |||
|---|---|---|---|---|---|---|---|---|---|
| Mean abundance & sd [%] | Mean abundance & sd [%] | ||||||||
| C-group | |||||||||
| OTU_200 | 0.509 | 0.032* | Emergencia timonensis strain SN18 | NR_144737.1 | 89 | 5.8E-02 | 8.6E-02 | 2.0E-02 | 3.3E-02 |
| OTU_258 | 0.486 | 0.016* | Acetanaerobacterium elongatum strain Z7 | NR_042930.1 | 90 | 1.9E-02 | 3.7E-02 | 1.1E-02 | 2.1E-02 |
| OTU_230 | 0.394 | 0.015* | Mitsuokella jalaludinii strain M9 | NR_028840.1 | 99 | 1.5E-01 | 5.2E-01 | 2.3E-03 | 7.4E-03 |
| OTU_319 | 0.356 | 0.034* | Olsenella scatoligenes strain SK9K4 | NR_134781.1 | 94 | 5.0E-02 | 1.6E-01 | 4.5E-03 | 1.6E-02 |
| GS-Group | |||||||||
| OTU_295 | 0.521 | 0.025* | Christensenella minuta strain YIT 12065 | NR_112900.1 | 90 | 2.6E-02 | 5.6E-02 | 4.6E-02 | 5.9E-02 |
| OTU_392 | 0.509 | 0.006** | Prevotella intermedia strain B422 | NR_026119.1 | 99 | 1.3E-02 | 1.9E-02 | 2.0E-02 | 2.3E-02 |
| OTU_465 | 0.464 | 0.01** | Aggregatibacter aphrophilus strain CIP 70.73 | NR_116167.1 | 99 | 1.4E-02 | 1.9E-02 | 1.6E-02 | 2.0E-02 |
| OTU_113 | 0.456 | 0.026* | Rhodospirillum rubrum strain ATCC 11170 | NR_074249.1 | 87 | 2.0E-02 | 7.2E-02 | 2.4E-01 | 8.8E-01 |
| OTU_109 | 0.438 | 0.022* | Novispirillum itersonii strain NBRC 15648 | NR_113793.1 | 87 | 4.4E-02 | 2.5E-01 | 2.0E-01 | 5.7E-01 |
| OTU_163 | 0.418 | 0.01** | Kiloniella majae strain M56.1 | NR_152635.1 | 87 | 3.4E-03 | 8.8E-03 | 1.1E-01 | 3.9E-01 |
| OTU_139 | 0.393 | 0.034* | Bacteroides coprophilus strain CB42 | NR_041461.1 | 99 | 5.1E-03 | 2.7E-02 | 4.9E-01 | 2.1E+00 |
| OTU_391 | 0.379 | 0.033* | Spiroplasma alleghenense strain PLHS-1 | NR_025697.1 | 85 | 2.8E-03 | 9.8E-03 | 3.6E-02 | 9.9E-02 |
| OTU_263 | 0.378 | 0.037* | Ethanoligenens harbinense strain YUAN-3 | NR_074333.1 | 92 | 1.3E-02 | 4.2E-02 | 2.7E-02 | 7.6E-02 |
| OTU_471 | 0.378 | 0.031* | Parabacteroides distasonis strain ATCC 8503 | NR_074376.1 | 98 | 8.5E-03 | 4.3E-02 | 1.5E-02 | 4.6E-02 |
Table shows assignment of the best-hit result using BLAST to the given OTU-Sequence and their mean relative abundance in the Control (C) group and Gilbert’s syndrome (GS) group stratified by the result of the multipatt-function of the indicspecies-package. p-values were not adjusted for multiple-testing but tested by permutation option: control = how(nperm=999) *p-values ≤ 0.05 and **p-values ≤ 0.01.