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. 2021 Sep 30;22(Suppl 13):376. doi: 10.1186/s12859-021-04297-z

Table 11.

The intersection of the first 10 pathways (sorted by the relevance of p value 0.005) obtained from BiP performing PEA using CC genes lists and the Reactome database

Pathway Name p value FDRc Bc
(1) Metabolism of proteins 2.32 × 10-63 4.66 × 10-60 4.66 × 10-60
(2) Post-translational protein modification 2.13 × 10-49 2.14 × 10-46 4.29 × 10-46
(3) Cellular responses to external stimuli 5.70 × 10-35 3.82 × 10-32 1.14 × 10-31
(4) Cell Cycle, Mitotic 1.90 × 10-33 9.57 × 10-31 3.83 × 10-30
(5) Mitotic G1-G1/S phases 1.90 × 10-33 7.65 × 10-31 3.83 × 10-30
(6) Cellular responses to stress 1.98 × 10-33 6.63 × 10-31 3.98 × 10-30
(7) Cell Cycle 3.03 × 10-33 8.71 × 10-31 6.10 × 10-30
(8) Mitotic G2-G2/M phases 9.07 × 10-32 2.28 × 10-29 1.82 × 10-28
(9) DNA Repair 6.35 × 10-31 1.42 × 10-28 1.28 × 10-27
(10) Cell Cycle Checkpoints 6.55 × 10-31 1.32 × 10-28 1.32 × 10-27

In the table, FDRc represents the corrected p value using FDR corrector, and Bc refers to the corrected p value using Bonferroni corrector