Table 12.

The intersection of the first 10 pathways (sorted by the relevance of p value $\le 0.005$) obtained from pathDIP performing PEA using CC genes lists and the Reactome database

Pathway Name	p value	FDRc	Bc
(1) Metabolism of proteins	3.18 × 10${}^{-74}$	6.31 × 10${}^{-71}$	6.31 × 10${}^{-71}$
(2) Immune System	1.46 × 10${}^{-60}$	9.64 × 10${}^{-58}$	2.89 × 10${}^{-57}$
(3) Post-translational protein modification	6.40 × 10${}^{-49}$	3.17 × 10${}^{-46}$	1.27 × 10${}^{-45}$
(4) Disease	4.02 × 10${}^{-37}$	1.33 × 10${}^{-34}$	7.96 × 10${}^{-34}$
(5) Gene expression (Transcription)	1.34 × 10${}^{-36}$	3.79 × 10${}^{-34}$	2.66 × 10${}^{-33}$
(6) RNA Polymerase II Transcription	1.01 × 10${}^{-29}$	2.00 × 10${}^{-27}$	2.00 × 10${}^{-26}$
(7) Innate Immune System	4.51 × 10${}^{-27}$	8.13 × 10${}^{-25}$	8.95 × 10${}^{-24}$
(8) Cell Cycle	2.07 × 10${}^{-25}$	2.93 × 10${}^{-23}$	4.11 × 10${}^{-22}$
(9) Generic Transcription Pathway	2.94 × 10${}^{-25}$	3.88 × 10${}^{-23}$	5.83 × 10${}^{-22}$
(10) Transcriptional Regulation by TP53	3.27 × 10${}^{-21}$	3.09 × 10${}^{-19}$	6.48 × 10${}^{-18}$

In the table, FDRc represents the corrected p value using FDR corrector, and Bc refers to the corrected p value using Bonferroni corrector