TABLE 1.
Characteristics of the complete genome sequences of enterovirus D68
| Strain name | Collection yr | Clade | Length (nt)a | Mean coverage (×) | GC content (%) | No. of reads | GenBank accession no. | Sequence Read Archive accession no. |
|---|---|---|---|---|---|---|---|---|
| TTa-08-Ph561 | 2008 | D | 7,345 | 721,607 | 43.6 | 39,221,310 | LC629436 | DRR290888 |
| TTa-11-Ph224 | 2011 | A | 7,341 | 483,009 | 45.3 | 27,067,922 | KX789259.2 | DRR290889 |
| TTa-11-Ph272 | 2011 | A | 7,326 | 539,946 | 44.8 | 29,216,542 | LC629437 | DRR290890 |
| TOp-12-Ph146 | 2012 | D | 7,347 | 716,609 | 43.7 | 41,049,786 | LC629438 | DRR290891 |
| TEv-13-Ph137 | 2013 | D | 7,345 | 754,494 | 43.0 | 40,919,452 | LC629439 | DRR290892 |
| TEv-13-Ph173 | 2013 | D | 7,331 | 556,697 | 44.0 | 31,184,658 | LC629440 | DRR290893 |
| TBp-13-Ph209 | 2013 | D | 7,345 | 547,823 | 43.3 | 29,362,644 | LC629441 | DRR290894 |
| TB9-15-Ph380 | 2015 | A | 7,323 | 562,271 | 43.6 | 31,531,112 | LC629442 | DRR290895 |
| TB6-15-Ph427 | 2015 | A | 7,326 | 518,999 | 43.6 | 28,072,258 | LC629443 | DRR290896 |
| TB8-15-Ph508 | 2015 | A | 7,338 | 550,706 | 43.8 | 29,741,840 | LC629444 | DRR290897 |
| TB5-16-Ph232 | 2016 | D | 7,333 | 673,218 | 44.4 | 37,958,344 | LC629445 | DRR290898 |
| TB5-16-Ph262 | 2016 | D | 7,332 | 498,668 | 44.6 | 27,844,200 | LC629446 | DRR290899 |
| TB5-17-Ph282 | 2017 | D | 7,333 | 701,096 | 44.5 | 39,897,452 | LC629447 | DRR290900 |
| TB5-18-Ph204 | 2018 | D | 7,345 | 646,862 | 45.5 | 41,004,934 | LC629448 | DRR290901 |
| TB5-18-Ph483 | 2018 | D | 7,345 | 679,355 | 43.6 | 36,960,002 | LC629449 | DRR290902 |
| TB5-18-Ph631 | 2018 | D | 7,345 | 515,932 | 44.0 | 27,821,086 | LC629450 | DRR290903 |
a
nt, nucleotides. Differences in length among clades occurred only in the variable region of the 5′ untranslated region.