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. 2021 Aug 19;5(10):1367–1381. doi: 10.1038/s41559-021-01525-w

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 2 — a, Hi-C contact map for the genome of A. suecica. b, Mixing of A. thaliana and A. arenosa Hi-C reads suggest interchromosomal contacts between homeologous chromosomes is a result of mis-mapping for Hi-C reads. c, Accession ‘AS530’ with the region of HE highlighted with an arrow (Fig. 6), no other rearrangements were observed. d, Hi-C of synthetic A. suecica (third selfed generation). e and f physical distance (Mb) vs genetic distance (cM) is plotted for the A. thaliana and A. arenosa subgenome, respectively. Chromosome 2 is not plotted as there are too few SNPs on this chromosome in our cross, due to the recent bottleneck in A. suecica.