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. 2021 Aug 19;5(10):1382–1393. doi: 10.1038/s41559-021-01523-y

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 6 — a, b, Average methylation levels with two biological replicates in A (a) and T (b) related genomes or subgenomes in allotetraploids. Two asterisks indicate statistical significance level of P < 0.01 (Mann–Whitney U-test). c, Heatmap of pairwise comparisons between correlation coefficients of methylated cytosines in CG context of Aar, Ath Ler4 (T), and respective subgenomes of F₁, 733, 738 and Asu. d, e, CG methylation levels in A1 (d) or T1 (e) related chromosomes of A. arenosa (Aar), A. thaliana (Ath Ler4), F₁, Allo733 (733), Allo738 (738), and A. suecica (Asu). f, g, CHG and CHH methylation levels in genic regions of Ath Ler4 (T) and Aar (A) relative to respective subgenomes in allotetraploids (F₁, Allo733, Allo738, and Asu).

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