Table 5.
Comparison of QMEAN4, ERRAT, Ramachandran plot, and Z score for the quality assessment of three-dimensional structures
| PDB ID | QMEAN 4 score | ERRAT quality factor (%) | Ramachandran plot | Z score | |||
|---|---|---|---|---|---|---|---|
| Residues in favored region (%) | Residues in additional allowed region (%) | Residues in generously allowed region (%) | Residues in disallowed region (%) | ||||
| 4EE9 | 0.54 | 96.154 | 89.7 | 10.3 | 0.0 | 0.0 | −9.91 |
| 4M1R | 0.40 | 95.606 | 88.1 | 11.9 | 0.0 | 0.0 | −7.56 |
| 5I2U | 0.09 | 94.965 | 87.7 | 11.9 | 0.0 | 0.4 | −9.36 |
| 4HTY | 0.11 | 96.530 | 90.0 | 9.7 | 0.3 | 0.0 | −9.64 |