Table 1.

Selected annotations that were significantly enriched in E. coli persisters

Annotation definition	KO(s)	Pfam(s)	VF(s)
Surface adhesion
Antigen 43	K12687		agn43
CdiA (Putative filamentous hemagglutinin)	K15125	PF05860, PF13332,	cdiA
		PF04829, PF15530,
		PF03865, PF08479,
		PF17287
Iron acquisition
Yersiniabactin biosynthesis	K04781, K04783,	PF08242, PF08659,	ybtS, ybtP, ybtA, irp2,
	K04784, K04785,	PF16197	irp1, ybtU, ybtE, fyuA
	K04786, K05372,
	K05373, K05374,
	K15721
Manganese/iron transport system, SitABCD	K11604, K11605,		sitA, sitB, sitC, sitD
	K11606, K11607
Bacterial toxins
Uropathogenic		PF01320, PF05638, PF06958	usp
Escherichia coli Colicin-Like (Usp)
Colibactin biosynthesis	K01071, K01426	PF08659, PF13602,	clbA, clbB, clbC, clbE,
		PF14765, PF16197,	clbF, clbG, clbH, clbI,
		PF01425, PF08020,	clbL, clbM, clbN, clbO, clbQ, clbR
		PF16197