Table 1.
Expression data (FPKMs or counts) of selected TTP targets in different immune cell types from wild type and TTP-KO mice.
| Gene_ID | Gene_name | BMDM, 3 h LPS, FPKM | BMDM, 6 h LPS, FPKM | BMDC, 3 h LPS, FPKM | BMDC, 6 h LPS, FPKM | Peritoneal neutrophils, 4 h LPS, FPKM | T cells, 4 h activation, counts | T cells, 3 day activation, counts | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Wild-type | TTP-KO | Wild-type | TTP-KO | Wild-type | TTP-KO | Wild-type | TTP-KO | Wild-type | TTP-KO | Wild-type | TTP-KO | Wild-type | TTP-KO | ||
| ENSMUSG00000029378 | Areg | ND | ND | ND | ND | 3.93 | 8.12 | 0.17 | 0.88 | 12.05 | 9.68 | 89.50 | 51.75 | 217.00 | 87.00 |
| ENSMUSG00000000982 | Ccl3 | 6937.76 | 9117.56 | 4183.66 | 16518.37 | 1260.15 | 4309.57 | 814.67 | 4136.92 | 8134.45 | 9617.97 | 22.50 | 22.00 | 56187.67 | 21074.00 |
| ENSMUSG00000018930 | Ccl4 | 9008.07 | 10206.05 | 4422.39 | 6764.60 | 652.02 | 1358.16 | 234.16 | 971.93 | 4055.42 | 3860.08 | 201.25 | 210.00 | 134778.33 | 80107.67 |
| ENSMUSG00000029380 | Cxcl1 | 629.10 | 1589.36 | 24.27 | 443.73 | 309.38 | 692.45 | 127.86 | 374.72 | 1900.60 | 2273.85 | 1.00 | 3.50 | 0.00 | 0.00 |
| ENSMUSG00000034855 | Cxcl10 | 11244.27 | 10914.54 | 10272.14 | 9763.24 | 494.36 | 1296.76 | 435.80 | 1888.26 | 57.05 | 51.66 | 486.00 | 475.50 | 12.00 | 10.67 |
| ENSMUSG00000058427 | Cxcl2 | 1563.82 | 5658.09 | 179.03 | 3428.48 | 862.66 | 3066.80 | 325.44 | 2415.03 | 27007.28 | 45947.78 | 8.50 | 14.25 | 260.33 | 60.33 |
| ENSMUSG00000029379 | Cxcl3 | 384.68 | 351.67 | 35.31 | 230.81 | 948.92 | 1404.63 | 536.80 | 1536.96 | 3174.43 | 3472.62 | 13.50 | 26.50 | 808.67 | 422.67 |
| ENSMUSG00000003541 | Ier3 | 173.04 | 335.38 | 215.25 | 358.83 | 27.72 | 69.97 | 31.33 | 77.18 | 999.89 | 1081.84 | 106.00 | 190.25 | 3273.00 | 12006.67 |
| ENSMUSG00000016529 | Il10 | 71.76 | 171.35 | 129.47 | 680.55 | 0.67 | 5.57 | 0.22 | 2.99 | 347.01 | 719.35 | 3.75 | 6.25 | 105982.33 | 149397.33 |
| ENSMUSG00000027399 | Il1a | 32.43 | 60.61 | 13.80 | 28.18 | 286.92 | 737.09 | 173.03 | 547.67 | 3642.63 | 4825.90 | 17.75 | 29.25 | 95.00 | 18.33 |
| ENSMUSG00000027398 | Il1b | 138.34 | 150.00 | 70.07 | 82.29 | 412.66 | 1241.13 | 259.85 | 940.15 | 9785.50 | 14043.60 | 56.50 | 96.50 | 0.00 | 0.00 |
| ENSMUSG00000025746 | Il6 | 72.51 | 62.09 | 35.80 | 76.62 | 293.93 | 629.44 | 317.59 | 684.42 | 324.30 | 201.17 | 50.00 | 76.25 | 57.00 | 42.33 |
| ENSMUSG00000032487 | Ptgs2 (or Cox2) | 206.85 | 155.98 | 1396.01 | 1288.74 | 1.09 | 3.96 | 3.14 | 12.91 | 6719.78 | 6566.11 | 5.25 | 9.50 | 26.00 | 49.67 |
| ENSMUSG00000020826 | Nos2 | 309.54 | 357.49 | 469.47 | 849.94 | 79.64 | 165.24 | 44.39 | 130.91 | 47.01 | 129.30 | 2.50 | 11.00 | 10609.00 | 5992.00 |
| ENSMUSG00000038037 | Socs1 | 487.62 | 538.13 | 159.49 | 206.37 | 60.32 | 124.91 | 55.28 | 208.53 | 24.88 | 11.66 | 1784.75 | 2112.00 | 2596.67 | 3844.00 |
| ENSMUSG00000053113 | Socs3 | 484.52 | 458.44 | 417.63 | 455.86 | 67.84 | 87.22 | 39.03 | 67.06 | 534.58 | 788.26 | 1327.50 | 1021.50 | 3515.00 | 11969.67 |
| ENSMUSG00000024401 | Tnf | 3321.70 | 4880.01 | 939.77 | 2661.18 | 522.03 | 1837.24 | 163.15 | 1196.23 | 12713.94 | 16190.19 | 4658.50 | 4404.25 | 41631.00 | 38744.00 |