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. 2021 Sep 30;22:707. doi: 10.1186/s12864-021-08006-1

Table 2.

General features of nine oedogonialean chloroplast genomes

Genomic Feature O. prescottii O. carolinianum (FACHB-2453) O. carolinianum Oe. cardiacum Oe. dentireticulatum Oe. crispum Oe.sp.
(FACHB-3311)
Oe. capilliforme Oe.sp.
(FACHB-3313)
Size (bp)
 Total 154,9 78 200,832 204,438 196,547 159,341 146,367 187,104 195,349 179,946
 IR 12,808 22,275 23,748 35,492 19,159 13,284 25,841 35,138 26,999
 LSC 80,821 98,462 98,887 80,363 77,718 76,475 86,403 80,003 80,347
 SSC 48,542 57,820 58,055 45,200 43,305 43,324 49,019 45,070 45,601
 A + T(%) 72.66 70.51 70.2 70.5 71.46 72.28 69.98 70.64 71.23
 Coding proportiona 67.0% 52.7% 51.4% 55.9% 64.1% 69.5% 54.8% 52.8% 55.9%
 Gene (+/−)bc 49/60 50/61 50/61 52/63 50/59 50/61 49/60 49/60 50/61
 Protein-coding genes(number/proportion)

68

29/43

68

28/44

68

28/44

70

31/45

68

29/43

68

29/43

68

29/43

68

29/43

68

29/43

 rRNA(number/proportion) 3 3 3 3 3/3 3/3 3/3 3/3 3/3
 tRNA(number/proportion)

28

17/14

30

19/14

30

19/14

29

18/15

29

18/14

29

18/15

28

17/14

28

17/14

29

18/15

 Introns 6 15 17 21 22 8 37 24 30
 Group I (no.) 1 5 7 17 18 4 26 20 25
 Group II (no.) 5 10 10 4 4 4 11 4 5
 Repeatsd(%) 4.8 8.9 11.3 1.3 3.9 4.0 4.7 3.3 4.9
 Accession number MT364368 MT364369 NC_031510 EU677193 MW250871 MW250872 MW250873 MW250874 MW250875

aThe coding proportion only includes all annotated protein-, rRNA-, and tRNA-coding regions; bGene and CDS numbers do not include ORF genes; cThe plus-minus sign means number of genes in plus strain (left side of slash) or minus strain (rightside of slash). dNon-overlapping repeat elements were mapped on each genome with RepeatMasker using as input sequences the repeats ≥30 bp identified with Vmatch