Table 2.
General features of nine oedogonialean chloroplast genomes
| Genomic Feature | O. prescottii | O. carolinianum (FACHB-2453) | O. carolinianum | Oe. cardiacum | Oe. dentireticulatum | Oe. crispum |
Oe.sp. (FACHB-3311) |
Oe. capilliforme |
Oe.sp. (FACHB-3313) |
|---|---|---|---|---|---|---|---|---|---|
| Size (bp) | |||||||||
| Total | 154,9 78 | 200,832 | 204,438 | 196,547 | 159,341 | 146,367 | 187,104 | 195,349 | 179,946 |
| IR | 12,808 | 22,275 | 23,748 | 35,492 | 19,159 | 13,284 | 25,841 | 35,138 | 26,999 |
| LSC | 80,821 | 98,462 | 98,887 | 80,363 | 77,718 | 76,475 | 86,403 | 80,003 | 80,347 |
| SSC | 48,542 | 57,820 | 58,055 | 45,200 | 43,305 | 43,324 | 49,019 | 45,070 | 45,601 |
| A + T(%) | 72.66 | 70.51 | 70.2 | 70.5 | 71.46 | 72.28 | 69.98 | 70.64 | 71.23 |
| Coding proportiona | 67.0% | 52.7% | 51.4% | 55.9% | 64.1% | 69.5% | 54.8% | 52.8% | 55.9% |
| Gene (+/−)bc | 49/60 | 50/61 | 50/61 | 52/63 | 50/59 | 50/61 | 49/60 | 49/60 | 50/61 |
| Protein-coding genes(number/proportion) |
68 29/43 |
68 28/44 |
68 28/44 |
70 31/45 |
68 29/43 |
68 29/43 |
68 29/43 |
68 29/43 |
68 29/43 |
| rRNA(number/proportion) | 3 | 3 | 3 | 3 | 3/3 | 3/3 | 3/3 | 3/3 | 3/3 |
| tRNA(number/proportion) |
28 17/14 |
30 19/14 |
30 19/14 |
29 18/15 |
29 18/14 |
29 18/15 |
28 17/14 |
28 17/14 |
29 18/15 |
| Introns | 6 | 15 | 17 | 21 | 22 | 8 | 37 | 24 | 30 |
| Group I (no.) | 1 | 5 | 7 | 17 | 18 | 4 | 26 | 20 | 25 |
| Group II (no.) | 5 | 10 | 10 | 4 | 4 | 4 | 11 | 4 | 5 |
| Repeatsd(%) | 4.8 | 8.9 | 11.3 | 1.3 | 3.9 | 4.0 | 4.7 | 3.3 | 4.9 |
| Accession number | MT364368 | MT364369 | NC_031510 | EU677193 | MW250871 | MW250872 | MW250873 | MW250874 | MW250875 |
aThe coding proportion only includes all annotated protein-, rRNA-, and tRNA-coding regions; bGene and CDS numbers do not include ORF genes; cThe plus-minus sign means number of genes in plus strain (left side of slash) or minus strain (rightside of slash). dNon-overlapping repeat elements were mapped on each genome with RepeatMasker using as input sequences the repeats ≥30 bp identified with Vmatch