Table 4. Summary of interactions of relevant genes for various drugs in hypomorph library with 162 essential genes.
drug | # genes with significant negative interactions (Zrobust<-3.5, Padj<0.05) | known target of drug | genes related to drug mechanism of action #rank (Zrobust) |
---|---|---|---|
levofloxacin | 9 | gyrA | #4: gyrA (-4.6)—DNA gyrase |
moxifloxacin | 10 | gyrA | #8: gyrA (-5.5)—DNA gyrase |
isoniazid | 9 | (inhA) * | #2: ino1 (-19.6)—inositol-3-phosphate synthase |
#11: kasB (-4.4)—ketoacyl synthase | |||
fidaxomicin | 7 | rpoB | #9: rpoB (-5.0)—RNA polymerase beta subunit |
sulfamethoxazole | 20 | (folP1) * | #7: thyA (-11.1)–thymidylate synthase |
bedaquiline | 4 | (atpE)* | #9: atpB (-2.8†)—subunit of ATP synthase |
#13: atpH (-2.2†)—subunit of ATP synthase | |||
#23: atpF (-1.3†)—subunit of ATP synthase | |||
#38: atpG (-0.8†)—subunit of ATP synthase |
† does not exceed the outlier cutoff of Zrobust<-3.5, but still has a negative slope showing synergy with the drug
* gene not represented in hypomorph library