Table 2.
List of bioinformatics tools for graphical analysis of sequencing information.
| Software | References |
|---|---|
| SeqCode | This article |
| BindDB | Livyatan et al.81 |
| CGAT | Sims et al.82 |
| ChAsE | Younesy et al.83 |
| ChIPseeker | Yu et al.84 |
| ChIP-seq tools | Ambrosini et al.85 |
| CisGenome | Ji et al.86 |
| Cistrome | Liu et al.44, Zheng et al.87 |
| deepTools | Ramirez et al.47, Ramirez et al.88 |
| EaSeq | Lerdrup et al.43 |
| Epidaurus | Wang et al.89 |
| GeneProf | Halbritter et al.90 |
| Genomation | Akalin et al.91 |
| HOMER | Heinz et al.92 |
| ngs.plot | Shen et al.45 |
| PyBedGraph | Zhang et al.93 |
| seqMINER | Ye et al.94 |
| Spark | Nielsen et al.95 |