Table 3.

Characteristic features of SeqCode and other similar resources.

Feature	SeqCode	BindDB	CGAT	ChAsE	ChIPseeker	ChIP-seq	CisGenome	Cistrome	deepTools	EaSeq	Epidaurus	GeneProf	genomation	HOMER	ngs.plot	PyBedGraph	seqMINER	Spark
Genomes
1. Selection	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X		X	X
2. All genomes	X		X	X					X	X				X
3. All assemblies	X		X	X					X	X				X		X
Reference
1. Gene	X	X	X					X			X	X		X
2. Enhancer	X	X	X											X	X
3. Genomic	X	X	X	X	X	X			X	X			X	X	X	X	X	X
Samples
1. ChIP-seq	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X
2. RNA-seq	X		X						X	X		X	X	X	X	X
3. ATAC-seq	X		X	X				X	X	X			X	X		X
Graphics
1. Aggregated	X		X	X		X		X	X	X	X		X	X	X		X
2. Heatmaps	X	X	X	X				X	X	X	X		X		X		X	X
3. Distributions	X		X		X	X		X		X			X	X			X
Counts
1. Custom tracks	X		X			X	X		X	X		X		X				X
2. Signal strength	X						X		X	X				X		X	X
3. Conservation	X					X	X	X
Interface
1. Local	X		X	X	X		X		`X	X			X	X	X	X	X	X
2. Flexible	X		X					X	X					X	X
3. Dynamic	X		X	X	X		X	X	X	X			X	X	X	X	X	X
Platform
1. Executable	X			X						X							X	X
2. Parametric	X			X					X						X	X	X
3. Portable	X	X	X	X	X	X	X	X	X		X	X	X	X	X	X	X	X
Documents
1. Web site	X	X	X	X	X	X	X	X	X	X	X		X	X	X			X
2. Tutorials	X		X	X		X		X	X	X	X			X	X
3. Self-docs	X									X