REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Casirivimab | Laboratory of Hans-Martin Jäck | N/A |
Imdevimab | Laboratory of Hans-Martin Jäck | N/A |
Bamlanivimab | Laboratory of Hans-Martin Jäck | N/A |
Etesevimab | Laboratory of Hans-Martin Jäck | N/A |
hIgG | Laboratory of Hans-Martin Jäck | N/A |
Goat anti-Human IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 | Thermo Fisher Scientific | Cat# A-11013; RRID: AB_2534080 |
Anti-VSV-G antibody (I1, produced from CRL-2700 mouse hybridoma cells) | ATCC | Cat# CRL-2700; RRID: CVCL_G654 |
Bacterial and virus strains | ||
VSV∗ΔG-FLuc | Laboratory of Gert Zimmer | N/A |
One Shot OmniMAX 2 T1R Chemically Competent E. coli | Thermo Fisher Scientific | Cat# C854003 |
Biological samples | ||
Patient Plasma (SI 15) | Laboratory of Martin Sebastian Winkler | N/A |
Patient Plasma (SI 18) | Laboratory of Martin Sebastian Winkler | N/A |
Patient Plasma (SI 22) | Laboratory of Martin Sebastian Winkler | N/A |
Patient Plasma (SI 23) | Laboratory of Martin Sebastian Winkler | N/A |
Patient Plasma (SI 24) | Laboratory of Martin Sebastian Winkler | N/A |
Patient Plasma (SI 27) | Laboratory of Martin Sebastian Winkler | N/A |
Patient Plasma (SI 33) | Laboratory of Martin Sebastian Winkler | N/A |
Patient Plasma (SI 51) | Laboratory of Martin Sebastian Winkler | N/A |
Vaccinee Serum (ID4844) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4846) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4847) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4848) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4849) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4863) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4864) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4865) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4866) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4867) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4868) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4872) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4874) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4876) | Laboratory of Georg M.N. Behrens | N/A |
Vaccinee Serum (ID4877) | Laboratory of Georg M.N. Behrens | N/A |
Chemicals, peptides, and recombinant proteins | ||
Soluble human ACE2 (sol-hACE2-Fc) | Laboratory of Stefan Pöhlmann | N/A |
Critical commercial assays | ||
Beetle-Juice Kit | PJK | Cat# 102511 |
Experimental models: Cell lines | ||
293T | DSMZ | Cat# ACC-635; RRID: CVCL_0063 |
A549 (ACE2) | Laboratory of Stefan Pöhlmann | N/A |
BHK-21 | Laboratory of Georg Herrler | ATCC Cat# CCL-10; RRID:CVCL_1915 |
Caco-2 | Laboratory of Stefan Pöhlmann | ATCC Cat# HTB-37; RRID: CVCL_0025 |
Calu-3 | Laboratory of Stephan Ludwig | ATCC Cat# HTB-55; RRID: CVCL_0609 |
Vero76 | Laboratory of Andrea Maisner | ATCC Cat# CRL-1586; RRID: CVCL_0574 |
Oligonucleotides | ||
SARS-2-S (BamHI) F (AAGGCCGGATCCG CCACCATGTTCGTGTTTCTGGTGCTGC) |
Sigma-Aldrich | N/A |
SARS-2-SΔ18 (XbaI) R (AAGGCCTCTAG ACTACTTGCAGCAGCTGCCACAG) |
Sigma-Aldrich | N/A |
SARS-2-S (T19R) F (GTGAACCTGCGCAC AAGAACCCAGCTGCCTCCAGC) |
Sigma-Aldrich | N/A |
SARS-2-S (T19R) R (GTTCTTGTGCGCAG GTTCACACACTGGCTGGAC) |
Sigma-Aldrich | N/A |
SARS-2-S (E142D) F (CCTTCCTGGACGTC TACTATCACAAGAAC) |
Sigma-Aldrich | N/A |
SARS-2-S (E142D) R (TAGTAGACGTCCAGGAAGGGGTCGTTG CAGAAC) |
Sigma-Aldrich | N/A |
SARS-2-S (E142D/E156G/F157Δ/R158Δ) Hyb F (GTTCTGCAACGACCCCTTCCTG GACGTCTACTATCACAAGAACAACAA GAGCTGG) |
Sigma-Aldrich | N/A |
SARS-2-S (E142D/E156G/F157Δ/R158Δ) Hyb R (CAGTTGTTGGCGCTGCTGTACA CCCCGCTTTCCATCCAGCTCTTGTTGTT CTTGTGATAG) |
Sigma-Aldrich | N/A |
SARS-2-S (E156G/F157Δ/R158Δ) F (TGGAAAGCGGGGTGTACAGCA GCGCCAACAACTGC) |
Sigma-Aldrich | N/A |
SARS-2-S (E156G/F157Δ/R158Δ) R (GCTGTACACCCCGCTTTCCAT CCAGCTCTTGTTG) |
Sigma-Aldrich | N/A |
SARS-2-S (L452R) F (TACAATTACCG GTACCGGCTGTTCCGGAAGTC) |
Sigma-Aldrich | N/A |
SARS-2-S (L452R) R (CAGCCGGTACc GGTAATTGTAGTTGCCGCCGAC) |
Sigma-Aldrich | N/A |
SARS-2-S (L452R/T478K) Hyb F (ACAATTACCGGTACCGGCTGTTCCG GAAGTCCAATCTGAAGCCCTTCGAG CGGGACATC) |
Sigma-Aldrich | N/A |
SARS-2-S (L452R/T478K) Hyb R (TTACAAGGTTTGCTGCCGGCCTG ATAGATCTCGGTGGAGATGTCCC GCTCGAAGGGCTTC) |
Sigma-Aldrich | N/A |
SARS-2-S (T478K) F (CCGGCAGCA AACCTTGTAACGGCGTGGAAGGCTTC) |
Sigma-Aldrich | N/A |
SARS-2-S (T478K) R (GTTACAAGGTTT GCTGCCGGCCTGATAGATCTCG) |
Sigma-Aldrich | N/A |
SARS-2-S (P681R) F (CAAACAGCCGC AGACGGGCCAGATCTGTG) |
Sigma-Aldrich | N/A |
SARS-2-S (P681R) R (GCCCGTCTGC GGCTGTTTGTCTGTGTCTG) |
Sigma-Aldrich | N/A |
SARS-2-S (D950N) F (AAGCTGCAGAA CGTGGTCAACCAGAATGCCCAGG) |
Sigma-Aldrich | N/A |
SARS-2-S (D950N) R (TGACCACGTTCT GCAGCTTTCCCAGGGCGCTTGC) |
Sigma-Aldrich | N/A |
SARS-2-S Seq-01 (CAAGATCTACAGCAAGCACACC) | Sigma-Aldrich | N/A |
SARS-2-S Seq-02 (GTCGGCGGCAACTACAATTAC) | Sigma-Aldrich | N/A |
SARS-2-S Seq-03 (CTGTCTGATCGGAGCCGAGCAC) | Sigma-Aldrich | N/A |
SARS-2-S Seq-04 (TGAGATGATCGCCCAGTACAC) | Sigma-Aldrich | N/A |
SARS-2-S Seq-05 (GCCATCTGCCACGACGGCAAAG) | Sigma-Aldrich | N/A |
pCG1 F (CCTGGGCAACGTGCTGGT) | Sigma-Aldrich | N/A |
pCG1 R (GTCAGATGCTCAAGGGGCTTCA) | Sigma-Aldrich | N/A |
Recombinant DNA | ||
Plasmid: pCG1 | Laboratory of Roberto Cattaneo | N/A |
Plasmid: pCAGGS-VSV-G | Laboratory of Stefan Pöhlmann | N/A |
Plasmid: pCAGGS-DsRed | Laboratory of Stefan Pöhlmann | N/A |
Plasmid: pCG1-SARS-2-SΔ18 (D614G), codon-optimized | Laboratory of Stefan Pöhlmann | N/A |
Plasmid: pCG1-SARS-2-SΔ18 (B.1.351), codon-optimized | Laboratory of Stefan Pöhlmann | N/A |
Plasmid: pCG1-SARS-2-SΔ18 (B.1.617.2), codon-optimized | Laboratory of Stefan Pöhlmann | N/A |
Plasmid: pCG1-solACE2-Fc | Laboratory of Stefan Pöhlmann | N/A |
Software and algorithms | ||
Hidex Sense Microplate Reader Software | Hidex Deutschland Vertrieb GmbH | https://www.hidex.de |
YASARA (version 19.1.27) | YASARA Biosciences GmbH | http://www.yasara.org |
Adobe Photoshop CS5 Extended (version 12.0 × 32) | Adobe | https://www.adobe.com/ |
GraphPad Prism (version 8.3.0(538)) | GraphPad Software | https://www.graphpad.com/ |
ZEN imaging software | Carl Zeiss | https://www.zeiss.com/corporate/int/home.html |
Microsoft Office Standard 2010 (version 14.0.7232.5000) | Microsoft Corporation | https://www.microsoft.com/microsoft-365 |
Other | ||
Complex of SARS-CoV-2 receptor binding domain with the Fab fragments of two neutralizing antibodies (PDB: 6XDG) | Hansen et al., 2020 | https://www.rcsb.org/structure/6XDG |
SARS-CoV 2 Spike Protein bound to LY-CoV555 (PDB: 7L3N) | Jones et al., 2020 | https://www.rcsb.org/structure/7L3N |
Molecular basis for a potent human neutralizing antibody targeting SARS-CoV-2 RBD (PDB: 7C01) | Shi et al., 2020 | https://www.rcsb.org/structure/7C01 |
Distinct conformational states of SARS-CoV-2 spike protein (PDB: 6XR8) | Cai et al., 2020 | https://www.rcsb.org/structure/6XR8 |