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. Boxplots of the Ct value as determined by EasySeq™ to illustrate the effect of viral load on the SARS-CoV-2 genome coverage. For the top two runs (v1 of EasySeq™), all samples regardless of Ct value are included. For the other four runs (v2 and v3 of EasySeq™) samples up to Ct 30 were included. For reporting to clinic and public health services samples with genome coverage <90% were excluded.
