Skip to main content
. 2021 Aug 28;25(5):359–367. doi: 10.52547/ibj.25.5.359

Table 3.

Assessing the pathogenicity of mutations identified using bioinformatics tools and ACMG Standards

Family ID Gene Position
(hg38) HGVSc/HGVSp
(RefSeq transcript)
Variant type
(Exon no./
Total exon no.)
in silico prediction ACMG classification/
inheritance
HS03 SLC4A1 chr17:44251320
NM_000342.3:c.2494C>T
NP_000333.1:p.Arg832Cys
Homo
Missense variant
Exon19/20
SIFT: deleterious
PolyPhen: probably damaging
Condle: deleterious
loF tool: probably damaging
GERP: 4.19
VUS, AR
SPTA1 chr1:158681592
NM_003126.2:c.466C>T
NP_003117.2:p.Arg156Trp
Hetero
Missense variant
Exon4/52
SIFT: deleterious
PolyPhen: possibly damaging
Condle: deleterious
loF tool: benign
GERP: 3.25
VUS, AD

AD, autosomal dominant, AR, autosomal recessive, VUS, Variant of uncertain significance