Table 3.
Assessing the pathogenicity of mutations identified using bioinformatics tools and ACMG Standards
Family ID | Gene |
Position
(hg38) HGVSc/HGVSp (RefSeq transcript) |
Variant type
(Exon no./ Total exon no.) |
in silico prediction |
ACMG classification/
inheritance |
---|---|---|---|---|---|
HS03 | SLC4A1 | chr17:44251320 NM_000342.3:c.2494C>T NP_000333.1:p.Arg832Cys |
Homo Missense variant Exon19/20 |
SIFT: deleterious PolyPhen: probably damaging Condle: deleterious loF tool: probably damaging GERP: 4.19 |
VUS, AR |
SPTA1 | chr1:158681592 NM_003126.2:c.466C>T NP_003117.2:p.Arg156Trp |
Hetero Missense variant Exon4/52 |
SIFT: deleterious PolyPhen: possibly damaging Condle: deleterious loF tool: benign GERP: 3.25 |
VUS, AD |
AD, autosomal dominant, AR, autosomal recessive, VUS, Variant of uncertain significance