Reagent/Resource | Reference or Source | Identifier or Catalog Number |
---|---|---|
Experimental Models | ||
Brucella abortus 2308::miniTn7K‐dsRed | Miller et al, 2017 | N/A |
Brucella abortus 2308 ∆bspF::miniTn7K‐dsRed | This study | N/A |
Brucella abortus 2308 ∆bspF::miniTn7K‐dsRed‐bspF | This study | N/A |
Brucella abortus 2308 ∆bspB::miniTn7K‐dsRed | Miller et al, 2017 | N/A |
Brucella abortus 2308 ∆bspB::miniTn7K‐dsRed‐bspB | Miller et al, 2017 | N/A |
Brucella abortus 2308 ∆virB11::miniTn7K‐dsRed | Smith et al, 2016 | N/A |
Homo sapiens: embryonic kidney 293T cells (HEK293T/17) | ATCC | Cat#CRL‐11268; RRID:CVCL_1926 |
Homo sapiens: HeLa cells (CCL‐2) | ATCC | Cat#CCL‐2; RRID:CVCL_0030 |
Homo sapiens: HeLa‐M clone 1 (C1) cells | Gordon et al, 2010 | N/A |
M. musculus: Bone Marrow Derived Macrophages (BMMs) from C57BL/6J mice | The Jackson Laboratory | Cat#000664 |
Recombinant DNA | ||
Indicate species for genes and proteins when appropriate | ||
pUC18T‐miniTn7K‐dsRed‐bspF Brucella abortus |
This study | N/A |
pUC18T‐miniTn7K‐dsRed | Smith et al, 2016 | N/A |
pUC18T‐Tn7‐tnp | Dr M Kovach; Myeni et al, 2013 | N/A |
pcDNA3‐arf6‐HA Homo sapiens |
This study | N/A |
pCMV‐HA | Clontech | Cat#635690 |
pCMV‐HA‐bspF Brucella abortus |
Myeni et al, 2013 | N/A |
pCMV‐Myc | Clontech | Cat#631604 |
pCMV‐myc‐ACAP1 Homo sapiens |
This study | N/A |
pmCherry‐C1 | Clontech | Cat#632524 |
pmCherry‐N1‐arf6 T27N Homo sapiens |
This study | N/A |
pmCherry‐bspF Brucella abortus |
This study | N/A |
pmCherry‐rab6a′T27N Homo sapiens |
This study | N/A |
pmCherry‐rab8a T22N Homo sapiens |
This study | N/A |
pEGFP‐ACAP1 Homo sapiens |
This study | N/A |
pEGFP‐N1‐arf6 Homo sapiens |
This study | N/A |
pEGFP‐N1‐arf6 Q67L Homo sapiens |
This study | N/A |
pEGFP‐N1‐arf6 T27N Homo sapiens |
This study | N/A |
pEGFP‐MICAL‐L1 Homo sapiens |
This study | N/A |
pEGFP‐rab6a Homo sapiens |
This study | N/A |
pEGFP‐rab6a′ Homo sapiens |
This study | N/A |
pEGFP‐rab8a Homo sapiens |
Hattula & Peränen, 2000 | N/A |
pEGFP‐rab11a Homo sapiens |
This study | N/A |
pEGFP‐stx6 Rattus norvegicus |
Kudlyk et al, 2013 | N/A |
pEGFP‐stx16 Homo sapiens |
Willett et al, 2013 | N/A |
pEGFP‐TGN38 | This study | N/A |
pEGFP‐VAMP3 Homo sapiens |
Addgene | Cat#42310 |
pEGFP‐VAMP4 Homo sapiens |
Addgene | Cat#42313 |
pCLXSN‐MCS2 | Miller et al, 2017 | N/A |
pCLXSN‐MCS2‐GFP | Miller et al, 2017 | N/A |
pCLXSN‐MCS2‐GFP‐ACAP1 Homo sapiens |
This study | N/A |
pCLXSN‐MCS2‐GFP‐ACAP1(R448Q) Homo sapiens |
This study | N/A |
pCLXSN‐MCS2‐arf6(Q67L)‐GFP Homo sapiens |
This study | N/A |
pCLXSN‐MCS2‐arf6(T27N)‐GFP Homo sapiens |
This study | N/A |
pCLXSN‐MCS2‐GFP‐bspF Brucella abortus |
This study | N/A |
pCLXSN‐MCS2‐mCherry | This study | N/A |
pCLXSN‐MCS2‐arf6Q67L‐mCherry Homo sapiens |
This study | N/A |
pCLXSN‐MCS2‐arf6T27N‐mCherry Homo sapiens |
This study | N/A |
pCL‐Eco | Imgenex, Novus Biologicals | Cat#NBP2‐29540 |
Antibodies | ||
Mouse monoclonal anti‐β‐Actin (clone 8H10D10) (1:20,000) |
Cell Signaling Technology® | Cat#3700S; Lot#18; RRID:AB 2227609 |
Rabbit monoclonal anti‐Arf6 (clone D12G6) (1:10,000) |
Cell Signaling Technology® | Cat#5740S, Lot#1; RRID:AB_10694539 |
Rabbit polyclonal anti‐Calnexin (IF 1:1,000) (WB 1:20,000) |
Enzo Life Sciences, Inc. | Cat#ADI‐SPA‐860‐D; Lot#12301304; RRID:AB_10616095 |
Mouse monoclonal anti‐ERGIC‐53 (G1/93) (1:200) |
Alexis® Biochemicals, Enzo Life Sciences, Inc. | Cat#ALX‐804‐602‐C100; RRID:AB_2051363 |
Mouse monoclonal anti‐GM130 (1:500) | BD Transduction Laboratories™, BD Biosciences | Cat#610823; Lot#07536; RRID:AB_398142 |
Rabbit monoclonal anti‐HA (clone C29F4) (1:10,000) |
Cell Signaling Technology® | Cat#3724S, Lot#9; RRID:AB_1549585 |
Rat monoclonal anti‐HA (3F10) (1:500) | Roche | Cat#1867423; RRID:AB_390918 |
Mouse monoclonal anti‐Hsp27 (G31) (1:10,000) |
Cell Signaling Technology® | Cat#2402; Lot#8; RRID:AB_331761 |
Rabbit polyclonal anti‐Lamin A/C (1:5,000) |
Cell Signaling Technology® | Cat#2032; Lot#5; RRID:AB_2136278 |
Rat monoclonal anti‐LAMP1 (1D4B) (1:400) |
Developmental Studies Hybridoma Bank, University of Iowa | Cat#1d4b; RRID:AB_2134500 |
Rabbit monoclonal anti‐Myc (clone 71D10) (1:10,000) |
Cell Signaling Technology® | Cat#2278S, Lot#5; RRID:AB_490778 |
Mouse monoclonal anti‐p230 (1:100) | BD Transduction Laboratories, BD Biosciences | Cat#611280; RRID:AB_398808 |
Rabbit monoclonal anti‐Rab6 (clone D37C7) (1:1,000) |
Cell Signaling Technology® | Cat#9625S, Lot#1; RRID:AB_10971791 |
Rabbit monoclonal anti‐Rab8a (clone D22D8) (1:1,000) |
Cell Signaling Technology® | Cat#6975S, Lot#2; RRID:AB_10827742 |
Rabbit monoclonal anti‐Syntaxin 6 (clone C34B2) (IF 1:100) (WB 1:1,000) |
Cell Signaling Technology® | Cat#2869S, Lot#6; RRID:AB_2196500 |
Peroxidase AffiniPure Goat anti‐Mouse IgG (1:10,000) |
Jackson Laboratories | Cat#115‐035‐071 |
Peroxidase AffiniPure Goat anti‐Rabbit IgG (1:10,000) |
Jackson Laboratories | Cat#111‐035‐144 |
Alexa Fluor™ 488‐conjugated donkey anti‐rabbit (1:500) |
Invitrogen, ThermoFisher, Scientific | Cat#A21208, Lot#1810450 |
Alexa Fluor™ 647‐conjugated donkey anti‐rat (1:500) |
Molecular Probes®, ThermoFisher, Scientific | Cat#A21208; Lot#1810450 |
Alexa Fluor™ 647‐conjugated phalloidin (1:250) |
Molecular Probes®, ThermoFisher, Scientific | Cat#A22287; Lot#1246069 |
Oligonucleotides and other sequence‐based reagents | ||
RC247‐bspF pGBKT7 Forward: 5′‐GATGGAGGCCGAATTCGCTGCAAAACCTTTGCTTGAGG‐3′ |
This study | N/A |
RC248‐bspF pGBKT7 Reverse: 5′‐GCAGGTCGACGGATCCTTTATGCTCGGTGAAACTGCG‐3′ |
This study | N/A |
RC603‐miniTn7K‐dsRed Forward: 5′‐ATCATCCTCATCACCGACAA‐3′ |
Myeni et al, 2013 | N/A |
RC604‐miniTn7K‐dsRed Reverse: 5′‐GCTATATTCTGGCGAGCGAT‐3′ |
Myeni et al, 2013 | N/A |
WSU0141‐ACAP1 Reverse BamHI: 5′‐TATTGGATCCTATTACAGCGTGTGGAGGTCATG‐3′ |
This study | N/A |
WSU0165‐Mutagenesis ACAP1 R448Q Forward: 5′‐GTTCCGGCATCCACCAGAGCCTTGGTGTTC‐3′ |
This study | N/A |
WSU0166‐Mutagenesis ACAP1 R448Q Reverse: 5′‐GAACACCAAGGCTCTGGTGGATGCCGGAAC‐3′ |
This study | N/A |
WSU0218‐bspF Tn7K Forward: 5′‐AGCTCGAATTCACCATCTTCCGATCTTGGCTG‐3′ |
This study | N/A |
WSU0219‐bspF Tn7K KpnI Reverse: 5′‐AAGGTACCTTATTTATGCTCGGTGAAACTGC‐3′ |
This study | N/A |
WSU0221‐bspF pmCherry Forward BglII: 5′‐CTCAGATCTGCTGCAAAACCTTTGCTTGAGG‐3′ |
This study | N/A |
WSU0222‐bspF pmCherry Reverse KpnI: 5′‐CGCGGTACCTTATTTATGCTCGGTGAAACTGC‐3′ |
This study | N/A |
WSU0247‐eGFP Forward EcoRI: 5′‐TAGCGGAATTCGTCGCCACCATGGTGAGC‐3′ |
This study | N/A |
WSU0248‐rab6a Reverse BamHI: 5′‐CGGGATCCGTTAGCAGGAACAGCCTCC‐3′ |
This study | N/A |
WSU0258‐rab6a T27N Forward: 5′‐CAAAGCGTTGGAAAGAATTCTTTGATCACCAGA‐3′ |
This study | N/A |
WSU0259‐rab6a T27N Reverse: 5′‐TCTGGTGATCAAAGAATTCTTTCCAACGCTTTG‐3′ |
This study | N/A |
WSU0350‐pEGFP‐N1 BamHI Reverse: 5′‐CGCGGATCCGCTTTACTTGTACAGCTCGTCCATG‐3′ |
This study | N/A |
WSU0353‐pEGFP C1 Reverse: 5′‐TGATCAGTTATCTAGATCCGGTGG‐3′ |
Miller et al, 2017 | N/A |
WSU0354‐pEGFP C1 Forward ClaI: 5′‐TAATATCGATGCCACCATGGTG‐3′ |
Miller et al, 2017 | N/A |
WSU0433‐arf6 Forward EcoRI: 5′‐ATAAGAATTCACCATGGGGAAGGTGCTA‐3′ |
This study | N/A |
WSU0435‐ACAP1 Forward SalI: 5′‐TTAGTCGACATGACGGTCAAGCTGGATTTCG‐3′ |
This study | N/A |
WSU0437‐arf6 Reverse KpnI: 5′‐GAGGTACCAGAGATTTGTAGTTAGAGGTTAACC‐3′ |
This study | N/A |
WSU0438‐rab11a Forward EcoRI: 5′‐ ATTAGAATTCTATGGGTACCCGCGAC‐3′ |
This study | N/A |
RC451‐ACAP1 pCMV Forward EcoRI: 5′‐ATGGAGGCCCGAATTCAAACGGTCAAGCTGGATTTCGAG‐3′ |
This study | N/A |
RC452‐ACAP1 pCMV Reverse EcoRI: 5′‐TCGGTCGACCGAATTCTTACAGCGTGTGGAGGTCATG‐3′ |
This study | N/A |
RC453‐acap1 pGADT7 Forward: 5′‐GGAGGCCAGTGAATTCACGGTCAAGCTGGATTTCGAG‐3′ |
This study | N/A |
RC464‐acap1 pGADT7 Reverse: 5′‐CGAGCTCGATGGATCCCAGCGTGTGGAGGTCATG‐3′ |
This study | N/A |
WSU0620‐MICAL‐L1 Forward HindIII: 5′‐ TAGTAAGCTTATATGGCTGGGCCG‐3′ |
This study | N/A |
WSU621‐MICAL‐L1 Reverse SalI: 5′‐ATTGTCGACTTAGCTCTTGTCTCTGG‐3′ | This study | N/A |
TW770‐bspF pEGFP‐C1 Forward BglII: 5′‐GTCCGGACTCAGATCTGCTGCAAAACCTTTGCTTGA‐3′ |
Myeni et al, 2013 | N/A |
TW771‐bspF pEGFP‐C1 Reverse BglII: 5′‐CTTGAGCTCGAGATCTTTATTTATGCTCGGTGAAACTGCG‐3′ |
Myeni et al, 2013 | N/A |
siRNA targeting sequence: ON‐TARGETplus Mouse Arf6 siRNA ‐ SMARTpool: CAAACGGGGUGGGGUAAUA, CUGACAUUUGACACGAAUA, CGGCAUUACUACACCGGGA, GGGUCUCAUCUUCGUGGUA | Dharmacon™ | Cat#L‐043217‐01‐0005 |
siRNA targeting sequences: ON‐TARGETplus Non‐targeting Pool: UGGUUUACAUGUCGACUAA, UGGUUUACAUGUUGUGUGA, UGGUUUACAUGUUUUCUGA, UGGUUUACAUGUUUUCCUA |
Dharmacon™ | CAT# D‐001810‐10‐20 |
siRNA targeting sequence: ON‐TARGETplus Mouse Rab6a siRNA ‐ SMARTpool: GGGCGGAGACUUCGGGAAU, UCAGAGGAAGUAUGCAUUA, GCACUUGGAUUAUGGAUCU, UCGUGGAGGUGAUGUAUUA | Dharmacon™ | CAT#L‐040858‐01‐0005 |
siRNA targeting sequences: ON‐TARGETplus Mouse Rab8a siRNA ‐ SMARTpool: CAGGAGCGGUUUCGAACAA, GUAUCAUGCUGGUCUACGA, CAGAAGGUAGCCAGCGGUA, CGGACUCGAUUCACAAAUU | Dharmacon™ | CAT#L‐040860‐01‐0005 |
siRNA targeting sequences: ON‐TARGETplus Mouse Stx6 siRNA ‐ SMARTpool: GCACAUCUAUUACGCUUAU, CAUCACAAGUACUCGGCAA, CUGGAGUGGCAGAUCGCUA, AGAACAUGUCGCAGCGCAU | Dharmacon™ | CAT#L‐059391‐01‐0005 |
Chemicals, Enzymes and other reagents | ||
Cytochalasin D | Thermo Fisher | Cat#C8272‐1MG, Lot#067M4075V |
AlexaFluor™488‐conjugated Cholera Toxin Subunit B | Invitrogen | Cat#C22841 |
Fetal Bovine Serum | Atlanta Biologicals | Cat#S10350H; Lot#J15105 |
Human epidermal growth factor (EGF) | EMD Millipore | Cat#01‐107 |
Normal horse serum | Gibco | Cat#16050‐130; Lot#1517706 |
FuGENE® 6 | Promega | Cat#E2692 |
Rapamycin | LC Laboratories® | Cat#R‐5000; Lot#ASW‐125 |
Aureobasidin A | Takara Bio USA, Inc | Cat#630499 |
X‐a‐Gal | Takara Bio USA, Inc | Cat#630463 |
Software | ||
Include version where applicable | ||
Adobe® Photoshop® CS6 software for Mac | Adobe Systems Incorporated, San Jose, California, USA |
products/photoshop; RRID:SCR_014199 |
CellProfiler4.0.7 | Broad Institute, Cambridge, Massachusetts, USA | www.cellprofiler.org |
GraphPad Prism® version 9.0e for Mac | GraphPad Software, La Jolla, California, USA | www.graphpad.com; RRID:SCR_002798 |
Fiji ImageJ 2.1.0 | Open source database, National Institute of Health | imageJ.nih.gov |
MacVector version 12.7.5 for Mac | MacVector, Inc., Apex, North Carolina, USA | www.macvector.com |
Other | ||
Matchmaker Gold Yeast Two‐Hybrid system | Takara Bio USA, Inc | Cat#630489 |
Mate & Plate human bone marrow cDNA library | Takara Bio USA, Inc | Cat#630477 |
Yeastmaker™ Yeast Transformation System 2 | Takara Bio USA, Inc | Cat#630439 |
Easy Yeast Plasmid Isolation kit | Takara Bio USA, Inc | Cat#630467 |
Arf6 G‐LISA Activation Assay Kit (Colorimetric Based) | Cytoskeleton, Inc. | Cat#BK133 |
Mouse Macrophage Nucleofector® Kit | Lonza | Cat#VPA1009 |