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. 2021 Aug 23;40(19):e107664. doi: 10.15252/embj.2021107664
Reagent/Resource Reference or Source Identifier or Catalog Number
Experimental Models
Brucella abortus 2308::miniTn7K‐dsRed Miller et al, 2017 N/A
Brucella abortus 2308 ∆bspF::miniTn7K‐dsRed This study N/A
Brucella abortus 2308 ∆bspF::miniTn7K‐dsRed‐bspF This study N/A
Brucella abortus 2308 ∆bspB::miniTn7K‐dsRed Miller et al, 2017 N/A
Brucella abortus 2308 ∆bspB::miniTn7K‐dsRed‐bspB Miller et al, 2017 N/A
Brucella abortus 2308 ∆virB11::miniTn7K‐dsRed Smith et al, 2016 N/A
Homo sapiens: embryonic kidney 293T cells (HEK293T/17) ATCC Cat#CRL‐11268; RRID:CVCL_1926
Homo sapiens: HeLa cells (CCL‐2) ATCC Cat#CCL‐2; RRID:CVCL_0030
Homo sapiens: HeLa‐M clone 1 (C1) cells Gordon et al, 2010 N/A
M. musculus: Bone Marrow Derived Macrophages (BMMs) from C57BL/6J mice The Jackson Laboratory Cat#000664
Recombinant DNA
Indicate species for genes and proteins when appropriate

pUC18T‐miniTn7K‐dsRedbspF

Brucella abortus

This study N/A
pUC18T‐miniTn7K‐dsRed Smith et al, 2016 N/A
pUC18T‐Tn7‐tnp Dr M Kovach; Myeni et al, 2013 N/A

pcDNA3‐arf6‐HA

Homo sapiens

This study N/A
pCMV‐HA Clontech Cat#635690

pCMV‐HA‐bspF

Brucella abortus

Myeni et al, 2013 N/A
pCMV‐Myc Clontech Cat#631604

pCMV‐myc‐ACAP1

Homo sapiens

This study N/A
pmCherry‐C1 Clontech Cat#632524

pmCherry‐N1‐arf6 T27N

Homo sapiens

This study N/A

pmCherry‐bspF

Brucella abortus

This study N/A

pmCherry‐rab6aT27N

Homo sapiens

This study N/A

pmCherry‐rab8a T22N

Homo sapiens

This study N/A

pEGFP‐ACAP1

Homo sapiens

This study N/A

pEGFP‐N1‐arf6

Homo sapiens

This study N/A

pEGFP‐N1‐arf6 Q67L

Homo sapiens

This study N/A

pEGFP‐N1‐arf6 T27N

Homo sapiens

This study N/A

pEGFP‐MICAL‐L1

Homo sapiens

This study N/A

pEGFP‐rab6a

Homo sapiens

This study N/A

pEGFP‐rab6a

Homo sapiens

This study N/A

pEGFP‐rab8a

Homo sapiens

Hattula & Peränen, 2000 N/A

pEGFP‐rab11a

Homo sapiens

This study N/A

pEGFP‐stx6

Rattus norvegicus

Kudlyk et al, 2013 N/A

pEGFP‐stx16

Homo sapiens

Willett et al, 2013 N/A
pEGFP‐TGN38 This study N/A

pEGFP‐VAMP3

Homo sapiens

Addgene Cat#42310

pEGFP‐VAMP4

Homo sapiens

Addgene Cat#42313
pCLXSN‐MCS2 Miller et al, 2017 N/A
pCLXSN‐MCS2‐GFP Miller et al, 2017 N/A

pCLXSN‐MCS2‐GFP‐ACAP1

Homo sapiens

This study N/A

pCLXSN‐MCS2‐GFP‐ACAP1(R448Q)

Homo sapiens

This study N/A

pCLXSN‐MCS2‐arf6(Q67L)‐GFP

Homo sapiens

This study N/A

pCLXSN‐MCS2‐arf6(T27N)‐GFP

Homo sapiens

This study N/A

pCLXSN‐MCS2‐GFP‐bspF

Brucella abortus

This study N/A
pCLXSN‐MCS2‐mCherry This study N/A

pCLXSN‐MCS2‐arf6Q67L‐mCherry

Homo sapiens

This study N/A

pCLXSN‐MCS2‐arf6T27N‐mCherry

Homo sapiens

This study N/A
pCL‐Eco Imgenex, Novus Biologicals Cat#NBP2‐29540
Antibodies

Mouse monoclonal anti‐β‐Actin (clone 8H10D10)

(1:20,000)

Cell Signaling Technology® Cat#3700S; Lot#18; RRID:AB 2227609

Rabbit monoclonal anti‐Arf6 (clone D12G6)

(1:10,000)

Cell Signaling Technology® Cat#5740S, Lot#1; RRID:AB_10694539

Rabbit polyclonal anti‐Calnexin

(IF 1:1,000) (WB 1:20,000)

Enzo Life Sciences, Inc. Cat#ADI‐SPA‐860‐D; Lot#12301304; RRID:AB_10616095

Mouse monoclonal anti‐ERGIC‐53 (G1/93)

(1:200)

Alexis® Biochemicals, Enzo Life Sciences, Inc. Cat#ALX‐804‐602‐C100; RRID:AB_2051363
Mouse monoclonal anti‐GM130 (1:500) BD Transduction Laboratories™, BD Biosciences Cat#610823; Lot#07536; RRID:AB_398142

Rabbit monoclonal anti‐HA (clone C29F4)

(1:10,000)

Cell Signaling Technology® Cat#3724S, Lot#9; RRID:AB_1549585
Rat monoclonal anti‐HA (3F10) (1:500) Roche Cat#1867423; RRID:AB_390918

Mouse monoclonal anti‐Hsp27 (G31)

(1:10,000)

Cell Signaling Technology® Cat#2402; Lot#8; RRID:AB_331761

Rabbit polyclonal anti‐Lamin A/C

(1:5,000)

Cell Signaling Technology® Cat#2032; Lot#5; RRID:AB_2136278

Rat monoclonal anti‐LAMP1 (1D4B)

(1:400)

Developmental Studies Hybridoma Bank, University of Iowa Cat#1d4b; RRID:AB_2134500

Rabbit monoclonal anti‐Myc (clone 71D10)

(1:10,000)

Cell Signaling Technology® Cat#2278S, Lot#5; RRID:AB_490778
Mouse monoclonal anti‐p230 (1:100) BD Transduction Laboratories, BD Biosciences Cat#611280; RRID:AB_398808

Rabbit monoclonal anti‐Rab6 (clone D37C7)

(1:1,000)

Cell Signaling Technology® Cat#9625S, Lot#1; RRID:AB_10971791

Rabbit monoclonal anti‐Rab8a (clone D22D8)

(1:1,000)

Cell Signaling Technology® Cat#6975S, Lot#2; RRID:AB_10827742

Rabbit monoclonal anti‐Syntaxin 6 (clone C34B2)

(IF 1:100) (WB 1:1,000)

Cell Signaling Technology® Cat#2869S, Lot#6; RRID:AB_2196500

Peroxidase AffiniPure Goat anti‐Mouse IgG

(1:10,000)

Jackson Laboratories Cat#115‐035‐071

Peroxidase AffiniPure Goat anti‐Rabbit IgG

(1:10,000)

Jackson Laboratories Cat#111‐035‐144

Alexa Fluor™ 488‐conjugated donkey anti‐rabbit

(1:500)

Invitrogen, ThermoFisher, Scientific Cat#A21208, Lot#1810450

Alexa Fluor™ 647‐conjugated donkey anti‐rat

(1:500)

Molecular Probes®, ThermoFisher, Scientific Cat#A21208; Lot#1810450

Alexa Fluor™ 647‐conjugated phalloidin

(1:250)

Molecular Probes®, ThermoFisher, Scientific Cat#A22287; Lot#1246069
Oligonucleotides and other sequence‐based reagents

RC247‐bspF pGBKT7 Forward:

5′‐GATGGAGGCCGAATTCGCTGCAAAACCTTTGCTTGAGG‐3′

This study N/A

RC248‐bspF pGBKT7 Reverse:

5′‐GCAGGTCGACGGATCCTTTATGCTCGGTGAAACTGCG‐3′

This study N/A

RC603‐miniTn7K‐dsRed Forward:

5′‐ATCATCCTCATCACCGACAA‐3′

Myeni et al, 2013 N/A

RC604‐miniTn7K‐dsRed Reverse:

5′‐GCTATATTCTGGCGAGCGAT‐3′

Myeni et al, 2013 N/A

WSU0141‐ACAP1 Reverse BamHI:

5′‐TATTGGATCCTATTACAGCGTGTGGAGGTCATG‐3′

This study N/A

WSU0165‐Mutagenesis ACAP1 R448Q Forward:

5′‐GTTCCGGCATCCACCAGAGCCTTGGTGTTC‐3′

This study N/A

WSU0166‐Mutagenesis ACAP1 R448Q Reverse:

5′‐GAACACCAAGGCTCTGGTGGATGCCGGAAC‐3′

This study N/A

WSU0218‐bspF Tn7K Forward:

5′‐AGCTCGAATTCACCATCTTCCGATCTTGGCTG‐3′

This study N/A

WSU0219‐bspF Tn7K KpnI Reverse:

5′‐AAGGTACCTTATTTATGCTCGGTGAAACTGC‐3′

This study N/A

WSU0221‐bspF pmCherry Forward BglII:

5′‐CTCAGATCTGCTGCAAAACCTTTGCTTGAGG‐3′

This study N/A

WSU0222‐bspF pmCherry Reverse KpnI:

5′‐CGCGGTACCTTATTTATGCTCGGTGAAACTGC‐3′

This study N/A

WSU0247‐eGFP Forward EcoRI:

5′‐TAGCGGAATTCGTCGCCACCATGGTGAGC‐3′

This study N/A

WSU0248‐rab6a Reverse BamHI:

5′‐CGGGATCCGTTAGCAGGAACAGCCTCC‐3′

This study N/A

WSU0258‐rab6a T27N Forward:

5′‐CAAAGCGTTGGAAAGAATTCTTTGATCACCAGA‐3′

This study N/A

WSU0259‐rab6a T27N Reverse:

5′‐TCTGGTGATCAAAGAATTCTTTCCAACGCTTTG‐3′

This study N/A

WSU0350‐pEGFP‐N1 BamHI Reverse:

5′‐CGCGGATCCGCTTTACTTGTACAGCTCGTCCATG‐3′

This study N/A

WSU0353‐pEGFP C1 Reverse:

5′‐TGATCAGTTATCTAGATCCGGTGG‐3′

Miller et al, 2017 N/A

WSU0354‐pEGFP C1 Forward ClaI:

5′‐TAATATCGATGCCACCATGGTG‐3′

Miller et al, 2017 N/A

WSU0433‐arf6 Forward EcoRI:

5′‐ATAAGAATTCACCATGGGGAAGGTGCTA‐3′

This study N/A

WSU0435‐ACAP1 Forward SalI:

5′‐TTAGTCGACATGACGGTCAAGCTGGATTTCG‐3′

This study N/A

WSU0437‐arf6 Reverse KpnI:

5′‐GAGGTACCAGAGATTTGTAGTTAGAGGTTAACC‐3′

This study N/A

WSU0438‐rab11a Forward EcoRI: 5′‐

ATTAGAATTCTATGGGTACCCGCGAC‐3′

This study N/A

RC451‐ACAP1 pCMV Forward EcoRI:

5′‐ATGGAGGCCCGAATTCAAACGGTCAAGCTGGATTTCGAG‐3′

This study N/A

RC452‐ACAP1 pCMV Reverse EcoRI:

5′‐TCGGTCGACCGAATTCTTACAGCGTGTGGAGGTCATG‐3′

This study N/A

RC453‐acap1 pGADT7 Forward:

5′‐GGAGGCCAGTGAATTCACGGTCAAGCTGGATTTCGAG‐3′

This study N/A

RC464‐acap1 pGADT7 Reverse:

5′‐CGAGCTCGATGGATCCCAGCGTGTGGAGGTCATG‐3′

This study N/A

WSU0620‐MICAL‐L1 Forward HindIII: 5′‐

TAGTAAGCTTATATGGCTGGGCCG‐3′

This study N/A
WSU621‐MICAL‐L1 Reverse SalI: 5′‐ATTGTCGACTTAGCTCTTGTCTCTGG‐3′ This study N/A

TW770‐bspF pEGFP‐C1 Forward BglII:

5′‐GTCCGGACTCAGATCTGCTGCAAAACCTTTGCTTGA‐3′

Myeni et al, 2013 N/A

TW771‐bspF pEGFP‐C1 Reverse BglII:

5′‐CTTGAGCTCGAGATCTTTATTTATGCTCGGTGAAACTGCG‐3′

Myeni et al, 2013 N/A
siRNA targeting sequence: ON‐TARGETplus Mouse Arf6 siRNA ‐ SMARTpool: CAAACGGGGUGGGGUAAUA, CUGACAUUUGACACGAAUA, CGGCAUUACUACACCGGGA, GGGUCUCAUCUUCGUGGUA Dharmacon™ Cat#L‐043217‐01‐0005

siRNA targeting sequences: ON‐TARGETplus Non‐targeting Pool:

UGGUUUACAUGUCGACUAA, UGGUUUACAUGUUGUGUGA, UGGUUUACAUGUUUUCUGA, UGGUUUACAUGUUUUCCUA

Dharmacon™ CAT# D‐001810‐10‐20
siRNA targeting sequence: ON‐TARGETplus Mouse Rab6a siRNA ‐ SMARTpool: GGGCGGAGACUUCGGGAAU, UCAGAGGAAGUAUGCAUUA, GCACUUGGAUUAUGGAUCU, UCGUGGAGGUGAUGUAUUA Dharmacon™ CAT#L‐040858‐01‐0005
siRNA targeting sequences: ON‐TARGETplus Mouse Rab8a siRNA ‐ SMARTpool: CAGGAGCGGUUUCGAACAA, GUAUCAUGCUGGUCUACGA, CAGAAGGUAGCCAGCGGUA, CGGACUCGAUUCACAAAUU Dharmacon™ CAT#L‐040860‐01‐0005
siRNA targeting sequences: ON‐TARGETplus Mouse Stx6 siRNA ‐ SMARTpool: GCACAUCUAUUACGCUUAU, CAUCACAAGUACUCGGCAA, CUGGAGUGGCAGAUCGCUA, AGAACAUGUCGCAGCGCAU Dharmacon™ CAT#L‐059391‐01‐0005
Chemicals, Enzymes and other reagents
Cytochalasin D Thermo Fisher Cat#C8272‐1MG, Lot#067M4075V
AlexaFluor™488‐conjugated Cholera Toxin Subunit B Invitrogen Cat#C22841
Fetal Bovine Serum Atlanta Biologicals Cat#S10350H; Lot#J15105
Human epidermal growth factor (EGF) EMD Millipore Cat#01‐107
Normal horse serum Gibco Cat#16050‐130; Lot#1517706
FuGENE® 6 Promega Cat#E2692
Rapamycin LC Laboratories® Cat#R‐5000; Lot#ASW‐125
Aureobasidin A Takara Bio USA, Inc Cat#630499
X‐a‐Gal Takara Bio USA, Inc Cat#630463
Software
Include version where applicable
Adobe® Photoshop® CS6 software for Mac Adobe Systems Incorporated, San Jose, California, USA

www.adobe.com/

products/photoshop; RRID:SCR_014199

CellProfiler4.0.7 Broad Institute, Cambridge, Massachusetts, USA www.cellprofiler.org
GraphPad Prism® version 9.0e for Mac GraphPad Software, La Jolla, California, USA www.graphpad.com; RRID:SCR_002798
Fiji ImageJ 2.1.0 Open source database, National Institute of Health imageJ.nih.gov
MacVector version 12.7.5 for Mac MacVector, Inc., Apex, North Carolina, USA www.macvector.com
Other
Matchmaker Gold Yeast Two‐Hybrid system Takara Bio USA, Inc Cat#630489
Mate & Plate human bone marrow cDNA library Takara Bio USA, Inc Cat#630477
Yeastmaker™ Yeast Transformation System 2 Takara Bio USA, Inc Cat#630439
Easy Yeast Plasmid Isolation kit Takara Bio USA, Inc Cat#630467
Arf6 G‐LISA Activation Assay Kit (Colorimetric Based) Cytoskeleton, Inc. Cat#BK133
Mouse Macrophage Nucleofector® Kit Lonza Cat#VPA1009