Table 1. Genome data for Salmo trutta, fSalTru1.1.
| Project accession data | |
|---|---|
| Assembly identifier | fSalTru1.1 |
| Species | Salmo trutta |
| Specimen | fSalTru1 |
| NCBI taxonomy ID | txid8032 |
| BioProject | PRJEB32115 |
| BioSample ID | SAMEA994732 |
| Isolate information | Female, muscle |
| Raw data accessions | |
| PacificBiosciences SEQUEL I | ERX3245920, ERX3253848-
ERX3253850, ERX3279922- ERX3279929, ERX3288373, ERX3311049-ERX3311054, ERX3311066, ERX3318044- ERX3318049, ERX3338928, ERX3338929 |
| 10X Genomics Illumina | ERX3341615-ERX3341622 |
| Hi-C Illumina | ERX4142808-ERX4142812 |
| BioNano | ERZ1395486 |
| Genome assembly | |
| Assembly accession | GCA_901001165.1 |
| Span (Mb) | 2,372 |
| Number of contigs | 5,378 |
| Contig N50 length (Mb) | 1.7 |
| Number of scaffolds | 1441 |
| Scaffold N50 length (Mb) | 52.2 |
| Longest scaffold (Mb) | 81.5 |
| BUSCO * genome score | C:94.7%[S:49.4%,D:45.3%],F:1.8%,
M:3.5%,n:4584 |
| Genome annotation | |
| Number of protein-coding
genes |
43,935 |
| Average coding sequence
length (bp) |
2,058 |
| Average number of exons
per gene |
13 |
| Average exon size (bp) | 210 |
| Average intron size (bp) | 2,770 |
*BUSCO scores based on the actinopterygii_odb10 BUSCO set using v5.0.0. C= complete [S= single copy, D=duplicated], F=fragmented, M=missing, n=number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/Salmo%20trutta/dataset/CAAJIE01/busco.