Table 2.
Comparison of plant development, hormone and stress-responsive cis-regulatory elements (CREs) in the promoter regions of Arabidopsis and rice WRKY, MADS-box, and MYB orthologous gene pairs.
| Clade | Gene identifier | Name | CRE function | ||
|---|---|---|---|---|---|
| Development | Hormone response | Abiotic/biotic stress | |||
| 2 | LOC_Os11g43740 | OsMADS68 | N//A | CGTCA-motif, TGACG-motif, ABRE, ABRE3a, ABRE4 | G-box |
| AT1G18750 | AtAGL65 | N/A | ABRE | S-box, GT1-motif, MBS, MYB, STRE, TCT-motif | |
| 1 | LOC_Os07g37210 | OsMYB102 | C-box, O2-site | ABRE3a, ABRE4, CGTCA-motif, TGACG-motif, O2-site | C-box, Sp1 |
| AT4G28110 | AtMYB41 | CAT-box | N/A | MBS, MYC, MYB | |
| 2 | LOC_Os04g39470 | OsMYB80 | Motif I, AP-2 like | ABRE3a, ABRE4, CGTCA-motif, TGACG-motif | G-box, GC-motif, Sp1 |
| AT5G56110 | AtMYB80 | As-1 | ABRE, As-1 | MYB, MYC, STRE, TCT-motif, W-box | |
| 4 | LOC_Os01g50110 | OsMYB13 | N/A | CGTCA-motif, TGACG-motif | GC-motif, Sp1 |
| AT3G13540 | AtMYB5 | N/A | ABRE | TCT-motif, MYC, AE-box, GT1-motif, MYB | |
| LOC_Os03g29614 | OsMYB46 | N/A | ABRE, CGTCA-motif, TGACG-motif | G-box, I-box, CCAAT-box | |
| AT5G35550 | AtMYB123 | N/A | N/A | MYC, GATA-motif, MYB | |
| 5 | LOC_Os12g33070 | OsMYB122 | AP-2 like | CGTCA-motif, TGACG-motif | ARE, G-box, GC-motif, I-box, Sp1 |
| AT5G12870 | AtMYB46 | As-1 | As-1 | S-box, MBS, MYB, STRE, W-box | |
| LOC_Os08g05520 | OsMYB93 | O2-site | CGTCA-motif, TGACG-motif, O2-site | G-box, GC-motif, Sp1 | |
| AT1G63910 | AtMYB103 | As-1, CAT-box | ABRE, As-1 | AE-box, GATA-motif, MYB, MYC | |
| 10 | LOC_Os04g46384 | OsMYB58 | N/A | ABRE, CGTCA-motif, TGACG-motif | G-box, Sp1 |
| AT3G60460 | AtMYB125 | As-1 | ABRE, As-1 | W-box, MYC, MYB, sbp-CMA1c | |
| LOC_Os01g63160 | OsMYB19 | GCN4_motif | ABRE, CGTCA-motif, TGACG-motif | ARE, GC-motif, I-box, LTR, P-box, Sp1 | |
| AT3G09230 | AtMYB1 | As-1 | As-1 | AE-box, GT1-motif, MBS, MYB, MYC, STRE | |
| 12 | LOC_Os04g28090 | OsMYB50 | N/A | ABRE3a, ABRE4 | ARE, G-box, P-box, Sp1 |
| AT1G09770 | AtMYBCDC5 | As-1, CAT-box | As-1 | GATA-motif, STRE, TCT-motif, W-box | |
| LOC_Os12g38400 | OsMYB125 | C-box, AP-2 like | CGTCA-motif, TGACG-motif | C-box, CCAAT-box, G-box, Sp1 | |
| AT2G37630 | AtMYB91 | As-1, CAT-box | ABRE, JERE | AE-box, MYB, MYC, STRE | |
| 13 | LOC_Os07g04700 | OsMYB87 | AP-2 like | ABRE3a, ABRE4, CGTCA-motif, TGACG-motif | LTR, P-box, Sp1 |
| AT3G18100 | AtMYB4R1 | As-1 | As-1 | GT1-motif, MBS, MYB, MYC, TCT-motif | |
| 1 | LOC_Os01g54600 | OsWRKY13 | N/A | CGTCA-motif, TGACG-motif | GC-motif, G-box |
| AT1G29280 | AtWRKY65 | As-1 | ABRE, As-1 | MYB, MYC, STRE | |
| 4 | LOC_Os02g53100 | OsWRKY32 | N/A | ABRE, CGTCA-motif, TGACG-motif | G-box, CCAAT-box, Sp-1 |
| AT1G68150 | AtWRKY9 | As-1 | ABRE, As-1 | AE-box, G-box, MYB, MYC | |
| 5 | LOC_Os01g60490 | OsWRKY22 | O2-site | ABRE, ABRE3a, ABRE4, CGTCA-motif, TGACG-motif, O2-site | Box II |
| AT2G40740 | AtWRKY55 | As-1, CAT-box | ABRE, As-1 | AE-box, S-box, GT1-motif, MYB, MYC, W-box | |
| 7 | LOC_Os07g39480 | OsWRKY87 | GCN4_motif, O2-site | CGTCA-motif, TGACG-motif, O2-site | ARE, GC-motif |
| AT4G26640 | AtWRKY20 | As-1 | ABRE, As-1 | AE-box, S-box, G-box, GATA-motif, MBS, MYB, MYC, STRE, TCT-motif, W-box | |
| LOC_Os08g17400 | OsWRKY89 | O2-site | ABRE, CGTCA-motif, TGACG-motif, O2-site | CCAAT-box, Sp1 | |
| AT4G30935 | AtWRKY32 | As-1 | As-1 | GATA-motif, GT1-motif, MBS, MYB, MYC, W-box | |
| LOC_Os01g62510 | OsWRKY119 | N/A | ABRE3a, ABRE4, CGTCA-motif, TGACG-motif | ARE, G-box, GC-motif, Sp1 | |
| AT2G37260 | AtWRKY44 | As-1 | As-1 | MBS, MYC, STRE, TCT-motif, W-box | |
| 8 | LOC_Os01g74140 | OsWRKY17 | N/A | CGTCA-motif, TGACG-motif | ARE, G-box, Sp1, GC-motif |
| AT5G43290 | AtWRKY49 | As-1 | ABRE, As-1 | S-box, DRE core, Gap-box, MYB, MYC, STRE | |
| LOC_Os01g53260 | OsWRKY23 | AP-2 like | CGTCA-motif, TGACG-motif | G-box, Sp1 | |
| AT2G46130 | AtWRKY43 | As-1 | ABRE, As-1 | MYB, MYC | |
| LOC_Os11g29870 | OsWRKY72 | N/A | CGTCA-motif, TGACG-motif | CCAAT-box | |
| AT5G13080 | AtWRKY75 | As-1 | As-1 | MYC, MYB, AE-box, G-box, STRE | |
| 9 | LOC_Os05g45230 | OsWRKY58 | N/A | ABRE, CGTCA-motif, TGACG-motif | CCAAT-box, GC-motif, Sp1 |
| AT4G12020 | AtWRKY19 | As-1, CAT-box | As-1 | DRE core, MYB, MYC, STRE, W-box | |