TABLE 1.
Summary of sequences selected with the Pax4 PD
| Nucleotide | Sequences selected with the Pax4 PDa
|
||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| −4 | −3 | −2 | −1 | C1 | C2 | C3 | C4 | C5 | C6 | C7 | +1 | +2 | +3 | +4 | +5 | +6 | +7 | +8 | +9 | +10 | |
| G | 8 | 26 | 10 | 16 | 25 | 3 | 14 | 6 | 6 | 34 | 7 | 33 | 7 | 23 | 5 | 12 | 11 | 13 | 8 | 4 | 6 |
| A | 4 | 1 | 6 | 11 | 3 | 0 | 0 | 36 | 11 | 0 | 3 | 3 | 0 | 7 | 8 | 6 | 4 | 10 | 8 | 2 | 6 |
| T | 7 | 4 | 10 | 0 | 12 | 40 | 0 | 0 | 21 | 5 | 3 | 4 | 27 | 3 | 8 | 8 | 1 | 3 | 7 | 8 | 4 |
| C | 7 | 4 | 16 | 15 | 3 | 4 | 29 | 1 | 5 | 4 | 30 | 3 | 7 | 5 | 11 | 4 | 14 | 5 | 6 | 13 | 9 |
| Consensusb | G | G/T | T | C/G | A | T/A | G | C | G | T | G | G/T | G/C | G/A | T/C | ||||||
a
Sequences corresponding to the 25 consecutive random nucleotides were aligned so as to maximize the homology as shown, and the number of each nucleotide in each position was calculated.
b
Optimal binding sequence, determined by alignment of frequently observed nucleotides.