Table 3.
List of 13 salt responsive candidate genes simultaneously highly expressed in both leaf and root tissues of salt tolerant alfalfa cultivar ‘Halo’
| Gene ID | Nr IDa | log2FCb(Leaf) | log2FC (Root) | Putative function | ||||
|---|---|---|---|---|---|---|---|---|
| 0h | 3h | 27h | 0h | 3h | 27h | |||
| MS.gene01091 | XP_003593572.2 | 6.7 | 7.3 | 6.9 | 8.4 | 9.4 | 10.3 | T-complex protein 1 subunit gamma [Medicago truncatula (barrel medic)] |
| MS.gene013211 | XP_003602730.1 | 7.3 | 5.9 | 6.7 | 9.9 | 8.9 | 7.5 | ribonuclease TUDOR 1 [Medicago truncatula (barrel medic)] |
| MS.gene013222 | XP_003602710.1 | 5.5 | 5.9 | 5.5 | 7.6 | 6.7 | 7.3 | cleft lip and palate transmembrane protein 1 homolog [Medicago truncatula (barrel medic)] |
| MS.gene017955 | XP_003625216.1 | 5.5 | 6.9 | 5.6 | NA | 9.5 | 7.7 | 40S ribosomal protein S20-2 [Medicago truncatula (barrel medic)] |
| MS.gene029200 | PNY01153.1 | 8.3 | 7.5 | 7.5 | 7.4 | 6.3 | 7.7 | replication factor A protein [Trifolium pratense] |
| MS.gene029202 | XP_013470381.1 | 7.7 | 8.1 | 7.2 | 8.2 | 8.1 | 8.5 | E3 ubiquitin-protein ligase CIP8 [Medicago truncatula (barrel medic)] |
| MS.gene029203 | XP_013470380.1 | NA | 6.8 | 7.3 | 6.8 | 8.0 | 8.5 | F-box/LRR-repeat protein 4 [Medicago truncatula (barrel medic)] |
| MS.gene049294 | XP_003602595.1 | 4.0 | 4.1 | 5.3 | 6.3 | 5.4 | 4.3 | caffeic acid 3-O-methyltransferase [Medicago truncatula (barrel medic)] |
| MS.gene32989 | GAU34467.1 | NA | 6.8 | 6.4 | 7.0 | 7.1 | 7.6 | hypothetical protein TSUD_06780 [Trifolium subterraneum] |
| MS.gene36780 | KEH43749.1 | 9.4 | 8.4 | 8.8 | 10.4 | 11.3 | 8.2 | elongation factor 1-alpha [Medicago truncatula (barrel medic)] |
| MS.gene36960 | AET01475.1 | 8.6 | 8.5 | 8.8 | 9.8 | 9.8 | 8.8 | elongation factor 1-alpha [Medicago truncatula] |
| MS.gene52595 | XP_003624202.1 | 7.3 | 8.0 | 7.7 | 9.5 | 8.1 | 7.9 | ER membrane protein complex subunit 10 [Medicago truncatula (barrel medic)] |
| MS.gene93979 | XP_003619874.1 | 7.7 | 6.9 | 7.9 | 7.4 | 7.4 | 7.0 | NF-X1-type zinc finger protein NFXL1 [Medicago truncatula (barrel medic)] |
aNr ID is the protein accession number in NCBI non redundant protein database
blog2FC stands for log Fold Change, where it is log base 2