Table 5.
List of 18 salt responsive candidate genes highly expressed in root tissue of salt tolerant alfalfa cultivar ‘Halo’
| Gene ID | Nr IDa | log2FCb (Root) | Putative function | ||
|---|---|---|---|---|---|
| 0h | 3h | 27h | |||
| MS.gene002389 | XP_003593475.1 | 7.4 | 8.0 | 7.9 | secretory carrier-associated membrane protein [Medicago truncatula (barrel medic)] |
| MS.gene011517 | XP_003608741.1 | 8.1 | 8.6 | 8.6 | 14 kDa proline-rich protein DC2.15 [Medicago truncatula (barrel medic)] |
| MS.gene013923 | XP_003624859.1 | 6.5 | 6.6 | 6.6 | histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Medicago truncatula (barrel medic)] |
| MS.gene023013 | XP_013448530.1 | 8.0 | 6.0 | 6.2 | peptidyl-prolyl cis-trans isomerase FKBP62 [Medicago truncatula (barrel medic)] |
| MS.gene02427 | AFK40071.1 | 6.9 | 5.7 | 5.5 | soluble inorganic pyrophosphatase PPA1 [Medicago truncatula (barrel medic)] |
| MS.gene029223 | XP_003592714.1 | 5.9 | 6.7 | 6.1 | E3 ubiquitin ligase BIG BROTHER-related [Medicago truncatula (barrel medic)] |
| MS.gene044457 | XP_013458006.1 | 7.3 | 6.4 | 7.0 | uncharacterized LOC25493896 [Medicago truncatula (barrel medic)] |
| MS.gene049130 | RDX70942.1 | 9.2 | 10.0 | 8.5 | Aldehyde dehydrogenase family 2 member C4, partial [Mucuna pruriens] |
| MS.gene049840 | XP_024638826.1 | 7.4 | 7.2 | 8.1 | uncharacterized LOC11406476 [Medicago truncatula (barrel medic)] |
| MS.gene056386 | XP_013456308.1 | 8.2 | 8.3 | 6.7 | fructokinase-2 [Medicago truncatula (barrel medic)] |
| MS.gene058673 | PNX87529.1 | 7.9 | 5.5 | 9.5 | heavy-metal-associated domain-containing protein [Trifolium pratense] |
| MS.gene070486 | XP_003616935.1 | 5.7 | 5.5 | 7.9 | phosphatidylglycerol/phosphatidylinositol transfer protein [Medicago truncatula (barrel medic)] |
| MS.gene073760 | XP_013468212.1 | 7.1 | 7.8 | 6.9 | probable E3 ubiquitin-protein ligase LOG2 [Medicago truncatula (barrel medic)] |
| MS.gene43277 | XP_003608928.1 | 6.9 | 7.7 | 7.4 | betaine aldehyde dehydrogenase 1, chloroplastic [Medicago truncatula (barrel medic)] |
| MS.gene46459 | XP_013467706.1 | 8.6 | 9.5 | 7.7 | uncharacterized LOC25483559 [Medicago truncatula (barrel medic)] |
| MS.gene61130 | XP_004487038.1 | NA | 4.4 | 4.1 | 60S ribosomal protein L23a-2-like [ Cicer arietinum (chickpea)] |
| MS.gene67829 | XP_013454067.1 | 9.5 | 8.7 | 9.1 | ribosomal RNA small subunit methyltransferase nep-1 [Medicago truncatula (barrel medic)] |
| MS.gene95536 | XP_013469288.1 | 6.7 | 7.4 | 7.0 | acyl-CoA-binding domain-containing protein 6 [Medicago truncatula (barrel medic)] |
aNr ID is the protein accession number in NCBI non redundant protein database
blog2FC stands for log Fold Change, where it is log base 2