TABLE 1.
Repair of a genomic DSB in the absence or presence of a homologous donor
Donor and cell linea | Electroporationb
|
Total no. of HAT-resistant colonies | Frequency of HAT-resistant colonies (10−5)c | |
---|---|---|---|---|
Construct used | No. | |||
No donor | ||||
Sce-3 | I-SceI | 42 | 157 | 0.03 |
pCMV-I-SceI | 10 | 650 | 0.65 | |
Mock | 13 | 0 | 0 | |
360-bp donor | ||||
360-1 | pCMV-I-SceI | 20 | 2,600 | 2.6 |
Mock | 5 | 0 | 0 | |
360-2 | pCMV-I-SceI | 20 | 2,000 | 2.0 |
Mock | 5 | 0 | 0 | |
2-kb donor | ||||
26-1 | pCMV-I-SceI | 5 | 673 | 2.7 |
Mock | 5 | 101 | 0.4 | |
26-2 | pCMV-I-SceI | 8 | 1,156 | 2.9 |
Mock | 8 | 58 | 0.14 |
Cell line Sce-3 contains an integrated copy of pTKSce (Fig. 1B), cell lines 360-1 and 360-2 each contain an integrated copy of pTKSce-360 (Fig. 1B), and cell lines 26-1 and 26-2 each contain an integrated copy of pTKSce-26 (Fig. 1B).
Cell line Sce-3 was electroporated with 150 U of I-SceI endonuclease or 5 μg of pCMV-I-SceI per electroporation. Other cell lines were electroporated with 10 μg of pCMV-I-SceI per electroporation. Mock electroporations were with PBS alone.
Total number of HAT-resistant colonies recovered divided by total number of cells electroporated.