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. 2021 Mar 8;89(3):343–363. doi: 10.1093/neuros/nyab019

TABLE 2.

Immunophenotype and Differential Diagnosis of Nervous System Tumors Associated With HCSa

Tumor Immunophenotype Important differential diagnosis
Astrocytoma GFAP+, S100+, Olig2 + IDH1R132H + and ATRX loss (in IDH1-mutant tumors) Pilocytic astrocytomaDD varies with location and may rest upon clinical and radiological parametersDiffuse astrocytoma (grade 2)Reactive conditions (clinical and neuroradiological imaging)Oligodendroglioma (monotonous round nuclei, 1p/19q codeletion)Anaplastic astrocytoma (grade 3)Glioblastoma (necrosis and microvascular proliferation)Oligodendroglioma (monotonous round nuclei, 1p/19q codeletion)Glioblastoma (grade 4)Metastatic neoplasm (not infiltrative, cohesive cells)Oligodendroglioma (Monotonous round nuclei, 1p/19q codeletion)PCNSL (CD45+, CD43+)
Atypical teratoid/rhabdoid tumor INI1 loss Medulloblastoma (synaptophysin+, retained INI1)
Choroid plexus carcinoma No specific IHC, CK+ Papillary tumor of the pineal regionPapillary endolymphatic sac tumor (component of VHL)AT/RT (INI1 loss)Small blue cell tumors (CK−)Anaplastic ependymoma (GFAP+, CK−)Germ cell tumors (SALL4+, OCT3/4+)
Dysplastic cerebellar gangliocytomas Synaptophysin+, NFTP+, NeuN+ Conventional gangliocytoma (abrupt interface with white matter)Astrocytoma (synaptophysin−)
Ependymoma GFAP+, S100+, EMA+ (dot-like intracytoplasmic) Schwannoma (strong S100+, GFAP−)Meningioma (EMA+, GFAP−)Pilocytic astrocytomaDiffuse astrocytomaNeurocytoma (synaptophysin+)Small blue cell tumors (GFAP−)
Hemangioblastoma Inhibin+ Metastatic clear cell carcinoma (PAX8+, Inhibin−)
Malignant peripheral nerve sheath tumor Diffuse H3K27me3 loss Synovial Sarcoma (NY-ESO+)Leiomyosarcoma (Desmin+, SMA+)Metastatic spindle cell melanoma (S100+, SOX10+)Neurotrophic melanoma (S100+, SOX10+)
Medulloblastoma Synaptophysin+, contain stellate reactive GFAP + astrocytes AT/RT (INI1 loss)Ependymoma (GFAP+)Metastatic small cell carcinoma (TTF1+)Neurocytoma (cytologically bland)
Meningioma Membranous EMA+, SSTR2A+, CK+ (secretory subtype), PR+, GFAP− Schwannoma (diffuse S100+, EMA−)SFT (STAT6+, CD34+, EMA−)Metastatic carcinoma (BerEP4+)Astroblastoma (Intra-axial, GFAP+)Melanocytoma (MelanA+, MiTF+, EMA−)
Neuroblastoma Synaptophysin+, NFTP+ Glioma (GFAP+)Neurocytoma (cytologically bland)
Neurofibroma Mixed population of S100 + and CD34+ Schwannoma (more uniform and pronounced S100+, CD34−)Low-grade MPNST (cellular, atypia, mitosis, focal S100 + or S100−)Ganglioneuroma (dysmorphic ganglion cells)DFSP (cellular, storiform growth pattern, S100−, uniform CD34 + involving all cells)NSM (lobulated, hypocellular, no association with nerve)Spindle cell lipoma (posterior neck location, S100−)Perineuroma (GLUT1+)
Oligodendroglioma No specific IHC, Olig2+ Reactive processesInfiltrating astrocytomaClear cell ependymoma (compact noninfiltrating architecture, EMA+)DNT (seizure history, compatible imaging, nodular architecture, floating neurons)PCNSL (CD45+, CD43+)
Retinoblastoma CRX+, NSE+ MedulloepitheliomaNematode endophthalmitisPersistent hyperplastic primary vitreousCoat's disease
Schwannoma Diffuse S100+, variable GFAP Neurofibroma (mixed population of S100 + and CD34+)NSM (lobulated, hypocellular, does not exhibit Antoni A and B pattern)MPNST (invade surrounding tissue, no hyaline vessels, monotonous growth, focal S100 + or S100−)Leiomyoma (no association with nerve, S100−, SMA+)Meningioma (patchy S100+, EMA+, Reticulin−)Pilocytic astrocytoma (Reticulin−)
Subependymal giant cell astrocytoma S100+, focal weakly Gemistocytic astrocytoma
GFAP+ Tumors with ganglion cells

aAlthough IHC offers rapid method of confirming the diagnosis of tumors, DNA methylation-based assay could be helpful to decipher the cases when IHC and DNA sequencing for mutations fail to reach a definite diagnosis.103

IHC, Immunohistochemistry.