Table 3.
Comparison of detection of individual families using microbial cultivation and amplicon sequencing.
| Assigned taxonomy family (Phylum) | MC D1 | AS D1 | MC D2 | AS D2 | MC D3 | AS D3 | MC D4 | AS D4 | MC D5 | AS D5 |
|---|---|---|---|---|---|---|---|---|---|---|
| Actinomycetaceae (Actinobacteria) | D | D | D | D | D | D | D | D | D | D |
| Micrococcaceae (Actinobacteria) | ND | ND | D | ND | ND | ND | ND | ND | ND | ND |
| Corynebacteriaceae (Actinobacteria) | D | D | D | D | D | ND | D | D | D | D |
| Sporichthyaceae (Actinobacteria) | ND | ND | ND | ND | ND | ND | ND | ND | ND | D |
| Euzebyaceae (Actinobacteria) | ND | ND | ND | D | ND | ND | ND | ND | ND | ND |
| Bacteroidaceae (Bacteroidetes) | ND | D | ND | ND | ND | D | ND | D | ND | D |
| Dysgonomonadaceae (Bacteroidetes) | ND | ND | ND | D | ND | ND | ND | D | ND | D |
| F082 (Bacteroidetes) | ND | D | ND | ND | ND | ND | ND | D | ND | D |
| Marinifilaceae (Bacteroidetes) | ND | D | ND | D | ND | D | ND | D | ND | D |
| MgMjR-022 (Bacteroidetes) | ND | ND | ND | ND | ND | ND | ND | ND | ND | D |
| Paludibacteracea (Bacteroidetes) | ND | D | ND | D | ND | D | ND | D | ND | D |
| Porphyromonadaceae (Bacteroidetes) | D | D | D | D | ND | D | D | D | D | D |
| Prevotellaceae (Bacteroidetes) | ND | D | ND | D | ND | D | ND | D | ND | D |
| Rikenellaceae (Bacteroidetes) | ND | D | ND | D | ND | D | ND | D | ND | D |
| Tannerellaceae (Bacteroidetes) | ND | D | ND | D | ND | D | ND | D | ND | D |
| Flavobacteriaceae (Bacteroidetes) | ND | ND | ND | D | ND | ND | ND | D | ND | D |
| Weeksellaceae (Bacteroidetes) | ND | D | ND | D | ND | ND | ND | ND | ND | ND |
| Lentimicrobiaceae (Bacteroidetes) | ND | D | ND | D | ND | D | ND | ND | ND | ND |
| Anaerolineaceae (Chloroflexi) | ND | D | ND | D | ND | D | ND | D | ND | D |
| Endomicrobiaceae (Elusimicrobia) | ND | ND | ND | D | ND | ND | ND | ND | ND | D |
| Campylobacteraceae (Epsilonbacteraeota) | D | D | ND | D | ND | D | D | D | ND | D |
| Helicobacteraceae (Epsilonbacteraeota) | ND | ND | ND | ND | ND | ND | ND | ND | ND | D |
| Staphylococcaceae (Firmicutes) | ND | ND | D | ND | ND | ND | ND | ND | ND | ND |
| Aerococcaceae (Firmicutes) | ND | ND | D | ND | D | ND | D | ND | ND | ND |
| Streptococcaceae (Firmicutes) | D | ND | D | ND | D | ND | ND | ND | D | ND |
| Christensenellaceae (Firmicutes) | ND | D | ND | D | ND | D | ND | D | ND | D |
| Clostridiales vadinBB60 group (Firmicutes) | ND | ND | ND | ND | ND | D | ND | D | ND | D |
| Defluviitaleaceae (Firmicutes) | ND | D | ND | D | ND | D | ND | D | ND | D |
| Family XI (Firmicutes) | ND | D | ND | D | ND | D | ND | D | ND | D |
| Family XII (Firmicutes) | ND | D | ND | D | ND | D | ND | D | ND | D |
| Family XIII (Firmicutes) | ND | ND | ND | D | ND | D | ND | D | ND | D |
| Lachnospiraceae (Firmicutes) | ND | ND | ND | D | ND | ND | ND | ND | ND | D |
| Peptostreptococcaceae (Firmicutes) | ND | ND | ND | D | ND | D | ND | D | ND | D |
| Ruminococcaceae (Firmicutes) | ND | ND | ND | D | ND | D | ND | ND | ND | D |
| Fusobacteriaceae (Fusobacteria) | ND | D | ND | D | ND | D | ND | D | ND | D |
| Leptotrichiaceae (Fusobacteria) | ND | D | ND | ND | ND | D | ND | ND | ND | D |
| Saccharimonadaceae (Patescibacteria) | ND | D | ND | D | ND | D | ND | D | ND | D |
| Comamonadaceae (Proteobacteria) | ND | ND | ND | ND | ND | ND | ND | ND | D | ND |
| Neisseriaceae (Proteobacteria) | D | ND | D | ND | D | ND | D | ND | D | ND |
| Desulfobulbaceae (Proteobacteria) | ND | ND | ND | D | ND | ND | ND | ND | ND | ND |
| Desulfovibrionaceae (Proteobacteria) | ND | ND | ND | ND | ND | ND | ND | ND | ND | D |
| Burkholderiaceae (Proteobacteria) | ND | D | ND | ND | ND | ND | ND | ND | ND | ND |
| Pasteurellaceae (Proteobacteria) | D | ND | D | ND | D | ND | D | ND | D | ND |
| Moraxellaceae (Proteobacteria) | ND | ND | ND | D | ND | ND | ND | ND | ND | ND |
| Synergistaceae (Synergistetes) | ND | D | ND | D | ND | D | ND | D | ND | D |
Designation D1 to D5 indicate individual dogs.
MC Microbial cultivation, AS Amplicon sequencing, D Detected, ND Not Detected.