Table 2.
Predector results on pathogen and saprobe proteomes held out of the training set.
| Organism | Classa | # proteins | # secreted | Predector | EP1 and Sec | EP2 and Sec | #homologs in top 50 | #Pfam domain in top 50 |
|---|---|---|---|---|---|---|---|---|
| Austropuccinia psidii Au_3 | B | 35,196 | 3606 (10%) | 1271 (4%) | 1272 (4%) | 1115 (3%) | 2 | 0 |
| Blumeria graminis f. sp. tritici 96224 | B | 8347 | 1612 (19%) | 696 (8%) | 694 (8%) | 540 (6%) | 20 | 0 |
| Melampsora larici-populina 98AG31 | B | 16,372 | 2366 (14%) | 1282 (8%) | 914 (6%) | 924 (6%) | 1 | 0 |
| Venturia inaequalis ICMP13258/MNH120 | B | 13,233 | 2212 (16%) | 1326 (10%) | 740 (6%) | 711 (5%) | 1 | 1 |
| Leptosphaeria maculans NzT4 | H | 14,026 | 2249 (16%) | 868 (6%) | 750 (5%) | 559 (4%) | 9 | 9 |
| Zymoseptoria tritici 3D1 | H | 11,991 | 1705 (14%) | 971 (8%) | 505 (4%) | 475 (4%) | 4 | 1 |
| Alternaria brassicicola BMP1950 | N | 10,688 | 1444 (14%) | 707 (7%) | 308 (3%) | 305 (3%) | 6 | 11 |
| Pyrenophora tritici-repentis M4 | N | 13,795 | 1561 (11%) | 850 (6%) | 347 (3%) | 368 (3%) | 6 | 8 |
| Fusarium oxysporum f. sp. melonis 26406 | W | 26,719 | 3323 (12%) | 1464 (5%) | 763 (3%) | 710 (3%) | 7 | 8 |
| Komagataella phaffii GS115 | S | 5040 | 389 (8%) | 76 (2%) | 67 (1%) | 65 (1%) | 0 | 4 |
| Schizosaccharomyces pombe 972h- | S | 5134 | 349 (7%) | 97 (2%) | 58 (1%) | 44 (1%) | 1 | 3 |
| Serpula lacrymans S7.9 | S | 14,495 | 1507 (10%) | 487 (3%) | 449 (3%) | 297 (2%) | 3 | 9 |
| Trichoderma reesei QM6a | S | 9115 | 1134 (12%) | 529 (6%) | 207 (3%) | 176 (2%) | 2 | 5 |
| Uncinocarpus reesii 1704 | S | 7798 | 766 (10%) | 289 (4%) | 161 (2%) | 149 (2%) | 2 | 5 |
| Yarrowia lipolytica CLIB122 | S | 6448 | 704 (11%) | 257 (4%) | 128 (2%) | 122 (2%) | 1 | 2 |
Class indicates the lifestyle of the fungus. Proteins were considered to be secreted if they have a secretion signal predicted by any method and fewer than two predicted transmembrane domains. Predector indicates the number of proteins with a Predector ranking score > 0. EffectorP 1 (EP1) and 2 (EP2) predictions were conditional on secretion and used the default 0.5 decision threshold. The number of protein sequence similarity matches to known effectors and matches to Pfam domains with putative virulence functions are noted for the top 50 candidates by ranked by Predector scores.
aMain lifestyle classes of each fungus. B Biotroph, H Hemibiotroph, N Necrotroph, W Wilt, S Saprotroph.