Table 3.
Functional enrichment results of PBMC RNA-seq data of the ictal vs. interictal comparison. DE list enrichment: overrepresentation of functional terms in the differentially expressed gene list. Ranked list enrichment: enrichment of genes associated with a certain pathway towards the top of the ranked whole data. GO: gene ontology, BP: biological process, CC: cellular component, MF molecular function. KEGG: Kyoto Encyclopedia of Genes and Genomes. Annotated: number of genes associated with the given term. R: Reactome database. Significant: number of statistically significant associated with the given term. Expected: expected number of genes associated with the given term in the DE gene list. Gene ratio: ratio of number of genes in the DE list that overlap with genes associated with the given term, and the number of genes in the DE list which overlap with genes associated with all terms in the Reactome database. Bg ratio: ratio of the number of genes associated with the given term, and the total number of genes associated with Reactome terms
| Ictal vs. interictal | |||||
|---|---|---|---|---|---|
| ID | DE list enrichment | Annotated | Significant | Expected | p-value |
| GO:1902305 BP | regulation of sodium ion transmembrane transport | 55 | 4 | 0.39 | 2.60E-14 |
| GO:0070382 CC | exocytic vesicle | 175 | 6 | 1.3 | 0.0019 |
| GO:0005179 | hormone activity | 61 | 3 | 0.43 | 0.00924 |
| KEGG 4742 | Taste transduction | 35 | 2 | 0.219161 | 0.019843 |
| Ranked list enrichment | Annotated | p-value | |||
| GO:0005746 CC | mitochondrial respiratory chain | 82 | 2.60E-14 | ||
| GO:0005125 MF | cytokine activity | 149 | 0.000001 | ||
| GO:0005179 MF | hormone activity | 61 | 6.95E-05 | ||
| GO:0030594 MF | neurotransmitter receptor activity | 57 | 0.000107 | ||
| GO:0004984 MF | olfactory receptor activity | 44 | 0.000433 | ||
| KEGG 4080 | Neuroactive ligand-receptor interaction | 157 | 9.04E-05 | ||
| KEGG 190 | Oxidative phosphorylation | 121 | 0.000845 | ||
| KEGG 140 | Steroid hormone biosynthesis | 36 | 0.00112 | ||