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. 2021 Oct 6;22(1):117. doi: 10.1186/s10194-021-01285-9

Table 3.

Functional enrichment results of PBMC RNA-seq data of the ictal vs. interictal comparison. DE list enrichment: overrepresentation of functional terms in the differentially expressed gene list. Ranked list enrichment: enrichment of genes associated with a certain pathway towards the top of the ranked whole data. GO: gene ontology, BP: biological process, CC: cellular component, MF molecular function. KEGG: Kyoto Encyclopedia of Genes and Genomes. Annotated: number of genes associated with the given term. R: Reactome database. Significant: number of statistically significant associated with the given term. Expected: expected number of genes associated with the given term in the DE gene list. Gene ratio: ratio of number of genes in the DE list that overlap with genes associated with the given term, and the number of genes in the DE list which overlap with genes associated with all terms in the Reactome database. Bg ratio: ratio of the number of genes associated with the given term, and the total number of genes associated with Reactome terms

Ictal vs. interictal
ID DE list enrichment Annotated Significant Expected p-value
GO:1902305 BP regulation of sodium ion transmembrane transport 55 4 0.39 2.60E-14
GO:0070382 CC exocytic vesicle 175 6 1.3 0.0019
GO:0005179 hormone activity 61 3 0.43 0.00924
KEGG 4742 Taste transduction 35 2 0.219161 0.019843
Ranked list enrichment Annotated p-value
GO:0005746 CC mitochondrial respiratory chain 82 2.60E-14
GO:0005125 MF cytokine activity 149 0.000001
GO:0005179 MF hormone activity 61 6.95E-05
GO:0030594 MF neurotransmitter receptor activity 57 0.000107
GO:0004984 MF olfactory receptor activity 44 0.000433
KEGG 4080 Neuroactive ligand-receptor interaction 157 9.04E-05
KEGG 190 Oxidative phosphorylation 121 0.000845
KEGG 140 Steroid hormone biosynthesis 36 0.00112