Table 2.

Genes significantly up- and down-regulated (│Ratio(log₂)│ > 1) in auto-aggregating compared to non-aggregation strains*

ORF	Product	Ratio (log2)
		PA4_02a)	IA01t0b)	IA01t0c)
Upregulated
LP_RS05230	MarR family transcriptional regulator	−5.17	−4.54	− 5.37
LP_RS05225	MucBP domain-containing protein	−4.23	−4.10	− 4.42
LP_RS02885	Hypothetical protein	−2.17	−1.54	−1.25
LP_RS10335	DUF4355 domain-containing protein	−2.04	−1.53	−1.29
LP_RS02870	DUF4355 domain-containing protein	−1.90	−1.18	− 1.22
LP_RS10300	Hypothetical protein	−1.55	−1.03	− 1.07
LP_RS14830	HAD family hydrolase	−1.52	−1.11	− 1.28
LP_RS10310	DUF3168 domain-containing protein	−1.49	−1.58	− 1.20
Downregulated
LP_RS01470	Hypothetical protein	1.05	1.27	1.22
LP_RS00795	Cna B-type domain-containing protein	1.08	1.02	1.04

^aAuto-aggregating PA4_02 compared to the wild type NZ3400

^bAuto-aggregating IA01t₀ compared to IA01t₄

^cAuto-aggregating IA01t₀ compared to the wild type NZ3400

*phage-related genes were omitted. ORF: open reading frame