TABLE 1.
Patient
|
Pneumococcal strain
|
||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Age (yr) | Sex | Clinical diagnosisa | Centerb | Strain no. | Clinical originc | Penicillin MIC (μg/ml) | Resistance profiled | Serotype | BOX PCR type | RFEL typee (cluster)f | PBP genotype |
<1 | Female | URTI | 7 | 39 | Nose | 4.0 | PAXCDELT | 23F | 1 | 106 (I) | 6-2-53 |
<1 | Male | URTI | 7 | 40 | Nose | 4.0 | PAXCDELT | 23F | 1 | 106 (I) | 6-1-53 |
Child | —g | URTI | 6 | 32 | Nose | 4.0 | PAXCDELT | 23F | 1 | 106 (I) | 6-1-53 |
1 | Male | URTI | 7 | 26 | Nose | 4.0 | PAXCDELT | 23F | 1 | 105 (I) | 6-18-53 |
Child | Male | URTI | 17 | 29 | Nose | 4.0 | PAXCDELT | 23F | 1 | 105 (I) | 6-18-56 |
1 | Male | LRTI | 1 | 6 | Throat | 8.0 | PAXCDET | 23F | 1 | 105 (I) | 16-3-1 |
<1 | Male | LRTI | 7 | 9 | Blood | 4.0 | PAXCDELT | 23F | 1 | 105 (I) | 6-18-53 |
1 | Male | URTI | 14 | 22 | Nose | 2.0 | PAXCDELT | 23F | 1 | 145 (I) | 6-14-43 |
6 | Male | Otitis media | 4 | 151 | Ear | 4.0 | PA*CDE** | 23F | 1 | 44 (I) | 6-14-43 |
4 | Female | URTI | 3 | 178 | Nose | 8.0 | PA*CDE** | 23F | 1 | 44 (I) | 6-14-1 |
4 | Male | URTI | 4 | 233 | Throat | 8.0 | PA*CDE** | 23F | 1 | 45 (I) | 6-14-1 |
5 | Female | URTI | 4 | 234 | Throat | 8.0 | PA*CDE** | 23F | 1 | 45 (I) | 6-14-1 |
Adult | Female | LRTI | 2 | 4 | Sputum | 2.0 | PAXCDET | 23F | 2 | 15 (II) | 1-1-1 |
13 | Female | LRTI | 18 | 16 | BAL | 2.0 | PAXDET | 23F | 2.1 | 15 (II) | 1-1-1 |
3 | Male | URTI | 16 | 33 | Throat | 2.0 | PAXCDET | 23F | 2 | 15 (II) | 1-18-1 |
57 | Male | Brain abscess | 12 | 8 | CSF | 0.5 | PCDELT | 19A | 3 | 104 | 7-17-52 |
55 | Male | LRTI | 10 | 2 | BAL | 1.0 | PCT | 6A | 4 | 97 | 2-5-51 |
— | — | — | 8 | 31 | — | 1.0 | PD | Rough | 5 | 148 | 0h-2-54 |
3 | Female | URTI | 7 | 36 | Nose | 1.0 | PCDELT | 6B | 6 | 147 | 0-1-54 |
14 | Male | LRTI | 9 | 12 | Sputum | 0.12 | PCDELT | 6B | 7 | 98 (III) | 2-2-9 |
7 | Male | LRTI | 9 | 13 | Sputum | 0.12 | PCDELT | 6B | 7 | 98 (III) | 2-2-9 |
3 | Female | LRTI | 9 | 14 | Blood | 0.12 | PCDELT | 6B | 7.1 | 98 (III) | 2-2-9 |
1 | Male | URTI | 13 | 35 | Nose | 0.12 | PCDELT | 6B | 7.2 | 98 (III) | 2-18-9 |
6 | Male | URTI | 16 | 34 | Nose | 0.12 | PCDELT | 6B | 7.1 | 98 (III) | 2-18-9 |
Adult | — | LRTI | 11 | 17 | Sputum | 0.12 | PCDELT | 6B | 7.3 | 102 (III) | 2-2-9 |
2 | Male | URTI | 14 | 23 | Nose | 0.12 | PDE | 6B | 7.3 | 102 (III) | 2-2-9 |
Child | Male | Conjunctivitis | 2 | 30 | Eye | 0.12 | PDEL | 6B | 7.1 | 102 (III) | 2-2-9 |
12 | Male | LRTI | 9 | 15 | Blood | 0.12 | PDEL | 6B | 7.2 | 101 (III) | 2-2-9 |
<1 | — | LRTI | 2 | 5 | Throat | 0.12 | PDEL | 6B | 7.3 | 99 (III) | 2-2-9 |
5 | Male | URTI | 17 | 27 | Nose | 0.12 | PCDET | 6B | 7.4 | 99 (III) | 2-2-9 |
Child | Female | URTI | 7 | 24 | Nose | 1.0 | PACDT | 9V | 8 | 23 (IV) | 1-1-1 |
Adult | Male | URTI | 17 | 38 | Nose | 1.0 | PAXCDET | 9V | 8.1 | 23 (IV) | 1-2-1 |
Adult | Female | LRTI | 6 | 1 | Pleural fluid | 1.0 | PAXCDET | 9V | 8.1 | 23 (IV) | 1-1-1 |
Child | Male | URTI | 5 | 10 | Nose | 1.0 | PAXCDET | 9V | 8 | 23 (IV) | 1-5-1 |
Adult | — | LRTI | 15 | 11 | Sputum | 2.0 | PAXCDELT | 14 | 8 | 23 (IV) | 1-5-1 |
Child | Female | URTI | 3 | 37 | Throat | 0.5 | PXCDT | 9V | 8.1 | 23 (IV) | 1-2-1 |
10 | Female | URTI | 19 | 181 | Throat | 1.0 | PA*C** | 9V | 8.1 | 140 (IV) | 1-1-1 |
URTI, upper respiratory tract infection; LRTI, lower respiratory tract infection.
See Fig. 1.
BAL, broncheoalveolar lavage; CSF, cerebrospinal fluid.
P, penicillin G; A, amoxicillin; X, cefotaxime, C, chloramphenicol; D, doxycycline; E, erythromycin; L, lincomycin; T, trimethoprim-sulfamethoxazole (co-trimoxazole); ∗, susceptibility to cefotaxime, lincomycin, and co-trimoxazole was not tested.
The arbitrary cutoff value for an identical RFEL type is 95%; RFEL codes refer exclusively to the genetic distances calculated by using the entire collection of 147 pneumococcal RFEL types, in which the Polish genotypes were included (see Materials and Methods) (13, 14).
See Fig. 2.
—, data not available.
Unknown PBP genotype.