Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2021 Oct;31(10):1767–1780. doi: 10.1101/gr.275569.121

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© 2021 Aevermann et al.; Published by Cold Spring Harbor Laboratory Press

This article, published in Genome Research, is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

PMC Copyright notice

Figure 3. — Comparing NS-Forest v1.3 and v2.0 marker gene sets. Heat maps of NS-Forest v1.3 (A) and v2.0 (B) markers from human middle temporal gyrus. The taxonomy along the top of each heat map is based upon the hierarchical clustering result described in Bakken et al. (2018) and Hodge et al. (2019). Expression values are log₂ CPM cluster medians normalized by row. The colors correspond to the normalized median expression level for the marker gene (rows) for a given cell type cluster (columns), with high expression (greater than five) in red and low expression (zero to negative five) in blue/white. (C) A blowup of the cell type labels corresponding to the heat map columns in parts A and B. (D) Box plots of F-beta and Binary Scores produced by NS-Forest v1.3 and v2.0 for all 75 cell type marker gene combinations. (E) Correlation of F-beta and Binary Scores between NS-Forest v1.3 and v2.0.