TABLE 2.

Genomic abundances (%) of the main repetitive sequences identified in the genomes of Stylosanthes and A. hypogaea. Bold values indicate the sum of each individual group of repeats as well as the total sum of repeat abundance.

Classes		Family	Genomic abundance (%)
			S. hamata (SHA 2701)	S. viscosa (SVI 2702)	S. scabra (SSC 2703)	S. capitata (SCA 2705)	S. pilosa (SPI 2706)	S. macrocephala (SMA 2707)	S. capitata RS024 (SCA 2708)	S. seabrana (SSE 2709)	S. guianensis (SGU 2710)	A. hypogaea
LTR Ty1/Copia		SIRE	14,950	9,882	13,880	11,680	5,084	1,564	4,871	12,250	0.275	1,0.097
		Ikeros						0.022				0.356
		Bianca	1,208		2,418	1,938	1,133	0.449	1,679	0.750	0.027	0.541
		Ale		0.138	0.048	0.187	0.065	0.192	0.024			0.159
		TAR		0.042				0.138				0.022
		Ivana		0.015	0.157	0.222	0.021	0.115	0.049
		Tork	0.204	0.756	0.495	0.757	0.575	1,100	0,0.398	0.276		0.185
			Total	16,362	10,833	16,998	14,784	6,878	3,58	7,021	13,276	0,302	2,36
LTR Ty3/Gypsy	non-chromovirus	Athila	39,450	31,890	31,730	31,780	24,750	27,220	34,670	37,940	35,220	46,170
		Ogre	0.294	0.106	0.310	0.728	0.397	0.177	0.028	0.088
		Retand	0.286	1,904	0.401	1,303	1,959	3,021	1,573	0.433	1,424	2,929
	chromovirus	Tekay	0.151	4,999	0.738	4,002	9,799	6,794	5,919	0.194	0.920	3,565
		Galadriel	0.085		0.128	0.147		0.056	0.018	0.087		0.052
		CRM	0.014			0.118	0.091		0.092	0.037
			Total	40,28	38,899	33,307	38,078	36,996	37,268	42,3	38,779	37,564	52,716
LTR non-classified		LTR		2,112
		Ty1_copia							0.016
Non-LTR		pararetrovirus		0.264		0.112	0.119		0.055			0.299
		LINE	0.033	0.311	0.422	0.730	0.107	0.367	0.378			0.369
Total			56,675	52,419	50,727	53,704	44,1	41,215	49,77	52,055	37,866	55,744
DNA transposons		MuDR_Mutator	0.255	1,400	0.333	0.811	1,148	1,393	0.909	0.155	0.744	0.379
		EnSpm_CACTA	0.206	0.618	0.119	0.555	0.548	0.375	0.276	0.419	1,182
		PIF_Harbinger					0.030	0.025	0.016			0.014
		hAT						0.041
		Helitron		0.030		0.025						0.039
DNA transposons non-classified		Classe_1	0.536	0.285	0.617	0.420	0.558	0.959	0.319	0.520	0.033
Total			0,997	2,333	1,069	1,811	2,284	2,793	1,52	1,094	1,959	0,432
rDNA		45S_rDNA	0.426	0.666	0.312	0.706	0.981	3,551	1,070	1,236	0.658	0.805
		5S_rDNA	0.018	0.051	0.034	0.093	0.152	0.185	0.107	0.064	0.139	0.270
Satellite DNA			3,269	1,038	4,835	0.450	0.852	1,079	0.931	0.173	0.693	1,484
Non-classified			5,459	6,002	11,360	10,290	5,464	12,660	11,180	10,010	17,730	8,778
Total of Repeats			66,844	62,509	68,337	67,054	53,833	61,483	64,578	64,632	59,045	67,513