Table 6.
Resistance (R) genes in the “TGdL” hazelnut genome compared with the genomes of “Jefferson,” and “Tombul” and those of B. pendula, C. fangiana, and Q. suber
| Species/Genotype | NBS | CNL | TNL | CN | TN | NL | TX | Others | RLP | RLK | TM-CC | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| “TGdL” | 18 (0.06%) | 32 (0.12%) | 1 (0%) | 23 (0.08%) | 1 (0%) | 33 (0.12%) | 6 (0.02%) | 1 (0%) | 93 (0.33%) | 547 (1.97%) | 55 (0.2%) | 810 (2.91%) |
| “Jefferson” | 2 (0.01%) | 0 (0%) | 0 (0%) | 1 (0%) | 0 (0%) | 2 (0.01%) | 2 (0.01%) | 0 (0%) | 11 (0.04%) | 67 (0.24%) | 1 (0%) | 86 (0.31%) |
| “Tombul” | 14 (0.05%) | 43 (0.15%) | 14 (0.05%) | 12 (0.04%) | 5 (0.02%) | 28 (0.1%) | 23 (0.08%) | 6 (0.02%) | 123 (0.44%) | 673 (2.42%) | 190 (0.68%) | 1131 (4.07%) |
| B. pendula | 20 (0.07%) | 10 (0.04%) | 48 (0.17%) | 0 (0%) | 16 (0.06%) | 31 (0.11%) | 70 (0.25%) | 5 (0.02%) | 30 (0.11%) | 662 (2.38%) | 50 (0.18%) | 942 (3.39%) |
| C. fangiana | 3 (0.01%) | 23 (0.08%) | 0 (0%) | 4 (0.01%) | 1 (0%) | 30 (0.11%) | 4 (0.01%) | 0 (0%) | 55 (0.2%) | 291 (1.05%) | 51 (0.18%) | 462 (1.66%) |
| Q. suber | 47 (0.17%) | 240 (0.86%) | 174 (0.63%) | 30 (0.11%) | 16 (0.06%) | 309 (1.11%) | 118 (0.42%) | 26 (0.09%) | 286 (1.03%) | 736 (2.65%) | 35 (0.13%) | 2017 (7.26%) |
For each resistance gene class, the number as well as the percentage over the total number of genes is reported. Resistance genes abbreviations (from Li et al. 2016): NBS, nucleotide-binding site; CNL, CC (coiled-coil)-NBS-LRR; TNL, TIR (Toll/Interleukin-1 receptor)-NBS-LRR; CN, CC-NBS; TN, TIR-NBS; NL, NBS-LRR; TX, TIR-unknown domain; RLK, receptor-like kinase; RLP, receptor-like protein; TM (transmembrane)-CC.