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. 2021 Aug 29;100(11):101448. doi: 10.1016/j.psj.2021.101448

Table 1.

Association test of 33 tag SNPs in the CCKAR with body weight of Lueyang black-boned chickens.

dbSNP No. Description1 Position BW163
 BW203
 BWOEP3
Effect size (kg) q value2 Effect size (kg) q value Effect size (kg) q value
rs80763185 g.73202243T>A Promoter 0.06 ± 0.06 0.45 0.12 ± 0.08 0.32 0.03 ± 0.05 0.72
rs8069022819 g.73202391C>T 0.07 ± 0.10 0.57 0.16 ± 0.13 0.39 0.02 ± 0.07 0.84
rs315057890 g.73202789G>A 0.02 ± 0.05 0.77 −0.03 ± 0.06 0.65 0.02 ± 0.03 0.74
rs80732062 g.73203040C>A 0.18 ± 0.18 0.47 0.28 ± 0.25 0.46 0.05 ± 0.14 0.81
rs80574517 g.73203169T>C 0.01 ± 0.04 0.87 −0.04 ± 0.06 0.60 0.01 ± 0.03 0.81
rs80606852 g.73203188G>A 0 ± 0.01 0.87 −0.01 ± 0.02 0.60 0 ± 0.01 0.81
rs313822901 g.73203705A>C 5’UTR 0.05 ± 0.11 0.75 −0.03 ± 0.15 0.89 0.09 ± 0.08 0.52
rs314442211 g.73203766A>G Exon1 0.04 ± 0.05 0.52 0 ± 0.06 0.99 0.02 ± 0.03 0.71
rs738006715 g.73203887T>G Intron1 0 ± 0.03 0.95 −0.03 ± 0.04 0.59 0 ± 0.02 0.90
rs731807150 g.73203909T>C 0.12 ± 0.10 0.39 0.09 ± 0.14 0.64 0.05 ± 0.08 0.66
rs314291631 g.73204661G>A Exon2 0.14 ± 0.06 0.06 0.18 ± 0.08 0.11 0.06 ± 0.05 0.37
rs731760029 g.73204992G>A Intron2 0.37 ± 0.20 0.13 0.15 ± 0.28 0.65 0.18 ± 0.15 0.47
rs741162975 g.73205010C>T 0.22 ± 0.14 0.21 0.07 ± 0.20 0.76 0.1 ± 0.11 0.54
rs315156020 g.73205026C>T 0.08 ± 0.04 0.12 0.05 ± 0.05 0.53 0.04 ± 0.03 0.37
rs317348557 g.73205278G>A 0.37 ± 0.13 0.03 0.44 ± 0.18 0.11 0.16 ± 0.10 0.34
Novel SNP g.73206001T>A 0.18 ± 0.10 0.13 0.25 ± 0.13 0.15 0.08 ± 0.07 0.48
rs738176321 g.73206169C>T 0.09 ± 0.03 0.03 0.10 ± 0.04 0.11 0.04 ± 0.02 0.34
rs314888442 g.73206650G>A 0.04 ± 0.02 0.03 0.04 ± 0.02 0.11 0.02 ± 0.01 0.34
rs315131298 g.73206714C>T Exon3 0.03 ± 0.01 0.03 0.04 ± 0.02 0.11 0.02 ± 0.01 0.34
rs735632107 g.73207113A>G Intron3 0.21 ± 0.08 0.03 0.22 ± 0.11 0.12 0.10 ± 0.06 0.34
rs739847171 g.73207633A>G 0.20 ± 0.08 0.03 0.23 ± 0.11 0.11 0.10 ± 0.06 0.34
rs317125667 g.73207665T>C 0.06 ± 0.02 0.03 0.07 ± 0.03 0.11 0.03 ± 0.02 0.34
rs736521747 g.73207685T>C 0.09 ± 0.03 0.03 0.10 ± 0.05 0.11 0.05 ± 0.03 0.34
rs739886504 g.73208244G>C Exon4 0.34 ± 0.14 0.04 0.44 ± 0.19 0.11 0.17 ± 0.10 0.34
rs314203051 g.73208495C>T Intron4 0.08 ± 0.04 0.12 0.09 ± 0.05 0.21 0.04 ± 0.03 0.37
rs733179782 g.73208549T>C 0.14 ± 0.06 0.07 0.14 ± 0.09 0.24 0.05 ± 0.05 0.47
rs14489898 g.73208752A>T 0.07 ± 0.06 0.40 0.07 ± 0.08 0.53 0.06 ± 0.04 0.37
rs317682933 g.73209189T>C Exon5 0.02 ± 0.03 0.48 0.04 ± 0.04 0.46 0.02 ± 0.02 0.61
rs794137364 g.73209364G>A 0.13 ± 0.14 0.48 0.27 ± 0.19 0.31 0.08 ± 0.10 0.61
rs317625103 g.73209893T>C 3’UTR 0.18 ± 0.06 0.03 0.18 ± 0.09 0.11 0.10 ± 0.05 0.34
rs317507055 g.73209978A>G 0.09 ± 0.11 0.51 0.11 ± 0.15 0.60 0.01 ± 0.08 0.90
Novel SNP g.73210106A>G 0.36 ± 0.14 0.03 0.47 ± 0.19 0.11 0.19 ± 0.11 0.34
rs14489900 g.73210214A>C 0.18 ± 0.10 0.16 0.13 ± 0.14 0.53 0.08 ± 0.08 0.52
1

Alleles in front are effect alleles. Physical positions of SNP at the chromosome 4 are given according to the chicken reference genome Galgal 6.0 in the UCSC database.

2

Q-values represent Benjamini and Hochberg adjusted P-values. Those shown in bold indicate significant association between tag SNPs and body weight.

3

BW16, BW20, and BWOEP represent body weight at 16, 20 weeks of age and the onset of egg production.