Table 2.
SDP | CHR | Peak (Mbp) | Left (Mbp) | Right (Mbp) | eQTLs | GO Enrichment (selection from enrichment table) | Phenotypic QTL [in Snoek et al. ( 2019)] | |
---|---|---|---|---|---|---|---|---|
TB1 | 14 (JU1511 and JU1941 vs JU1926 and JU1931) | I | 1.03 | 0.03 | 2.03 | 1,339 | Thermosensory behavior, negative regulation of engulfment of apoptotic cell, DNA replication, embryonic body morphogenesis, establishment or maintenance of actin cytoskeleton polarity, muscle fiber development, epidermis development, response to unfolded protein and, molting cycle, collagen, and cuticulin-based cuticle | Population growth on Erwinia and on B. thuringiensis |
TB2 | JU1511 | I | 0.83 | 0 | 1.83 | 443 | Regulation of protein stability, regulation of vulval development, DNA replication, anaphase-promoting complex and, microtubule polymerization | NA |
TB3 | JU1931 | V | 10.74 | 9.74 | 11.74 | 607 | Hemidesmosome assembly, external side of plasma membrane and, negative regulation of response to oxidative stress | NA |
TB4 | JU1511 | X | 3.40 | 2.40 | 4.40 | 133 | Adenyl-nucleotide exchange factor activity | Heat-shock sensitivity |
TB5 | JU1941 | X | 14.69 | 13.69 | 15.64 | 225 | Dendrite morphogenesis | Population growth on B. thuringiensis |
TB6 | JU1941 | X | 16.60 | 15.65 | 17.6 | 957 | Embryonic body morphogenesis, DNA replication, integral component of peroxisomal membrane, anaphase-promoting complex, endosome, phagocytic vesicle membrane, neuronal signal transduction, response to anoxia, cuticle pattern formation, cell fate commitment, hemidesmosome-associated protein complex, and response to lipid | Sensitivity to oxidative stress |
Selection of enriched GO terms from Supplementary Table S3 and overlap with phenotypic QTLs found in Snoek et al. (2019).