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. 2021 Apr 19;11(7):jkab130. doi: 10.1093/g3journal/jkab130

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© The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America.

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Quantitative trait locus analysis of leaf chlorophyll content. A Manhattan plot showing the significant association of SNPs with leaf chlorophyll content as calculated by GWASpoly (Rosyara et al. 2016). The y-axis shows the –log₁₀(p) value of each SNP. The x-axis shows the genomic position. Blue dashed line indicates the significance, i.e., –log₁₀(p) >3. The value corresponding to FDR <0.05 is given in gray dashed line. SNPs located near chr01:5692791, chr03:1376034, and chr07:25128206 exceeded the threshold (P < 0.001) and only SNPs close to chr03:1376034 exceeded FDR <0.05.