Table 1.
Genomescope | findGSE | ||
---|---|---|---|
k = 19 | Heterozygosity (%) | 1.65 | 1.26 |
Genome haploid size (Gb) | 1.74 | 1.9 | |
Repeat (%) | 45.86 | 37.79 | |
k = 21 | Heterozygosity (%) | 1.68 | 1.29 |
Genome haploid size (Gb) | 1.74 | 1.96 | |
Repeat (%) | 36.91 | 31.3 | |
k = 23 | Heterozygosity (%) | 1.65 | 1.29 |
Genome haploid size (Gb) | 1.75 | 1.93 | |
Repeat (%) | 34.28 | 28.93 | |
k = 25 | Heterozygosity (%) | 1.6 | 1.27 |
Genome haploid size (Gb) | 1.75 | 1.89 | |
Repeat (%) | 33.14 | 27.55 | |
k = 27 | Heterozygosity (%) | 1.56 | 1.16 |
Genome haploid size (Gb) | 1.75 | 1.96 | |
Repeat (%) | 32.37 | 27.03 |
These estimates include the percentage heterozygosity, haploid genome size and percentage of repeat content based on k-mer analysis using GenomeScope and findGSE for a range of k-mers (k = 19, 21, 23, 25, 27).