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. 2021 Sep 27;17(9):e1009820. doi: 10.1371/journal.pgen.1009820

Fig 2. Neighbor Joining tree of allelic differences in genomes in HC50_147.

Fig 2

Ninja NJ [64] visualization of allelic differences in the 3002 core genes of the cgMLST Salmonella scheme with GrapeTree [57]. At least 20 alleles differ between HC20_373 and all other HC20 clusters in the tree. The tree encompasses all 2098 HC50_147 genomes in EnteroBase on 1 December, 2020 at which time-point EnteroBase contained >270,000 Salmonella genomes. An interactive plot of this data can be found together with additional metadata at http://enterobase.warwick.ac.uk/ms_tree/50936.