Skip to main content
. 2021 Sep 22;24(10):103153. doi: 10.1016/j.isci.2021.103153
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and virus strains

BL21(DE3) Thermo Fisher Scientific (Rockford, IL) EC0114

Chemicals, peptides, and recombinant proteins

Ubiquitin like protease (ULP) Sigma-Aldrich (St. Louis, MO) SAE0067
Thrombin Sigma-Aldrich (St. Louis, MO)
Palmitoyl-coenzyme A Avanti Polar Lipids, Inc. (Alabaster, AL)
Restriction enzymes, DNA polymerases, ligase, DNA, and protein markers Thermo Fisher Scientific (Rockford, IL)
Ni-NTA resin Clontech Laboratories (Mountain View, CA)

Deposited data

SMT3 structure PDB: 3PGE
VLCAD structure PDB: 3B96
MCAD-ETF structure PDB: 2A1T

Oligonucleotides

5′-TAATACGACTCACTATAGGG-3′ This work T7 promoter
5′-CCCGGC GTCGAC TCA GTG ATG ATG-GTG GTG ATG GCT CCC GCA GGT GCG GTC CAG AGG-3′ This work 3′ antisense

Recombinant DNA

ECSIT (UniProtKB-Q9BQ95) cDNA GenScript (Piscataway, USA)
NDUFAF1 (UniProtKB-Q9Y375) cDNA GenScript (Piscataway, USA)
pET21b vector Sigma Aldrich 69741
pET28a vector Sigma Aldrich 69864
His6-SMT3-pET28a vector
QuickChange Site-Directed Mutagenesis Kit Agilent 200519

Software and algorithms

Protein Calculator v3.4 http://protcalc.sourceforge.net/
ATSAS (Franke et al., 2017) https://www.embl-hamburg.de/biosaxs/software.html
PRIMUS (Konarev et al., 2003) https://www.embl-hamburg.de/biosaxs/software.html
GNOM (Svergun, 1992) https://www.embl-hamburg.de/biosaxs/software.html
DAMMIF (Franke and Svergun, 2009) https://www.embl-hamburg.de/biosaxs/software.html
DAMSTART (Petoukhov et al., 2012) https://www.embl-hamburg.de/biosaxs/software.html
DAMMIN (Svergun, 1999) https://www.embl-hamburg.de/biosaxs/software.html
SWISS-MODEL server (Waterhouse et al., 2018) https://swissmodel.expasy.org/
Robetta web server (Kim et al., 2004) https://robetta.bakerlab.org/
GalaxyGemini server (Lee et al., 2013) http://galaxy.seoklab.org/cgi-bin/submit.cgi?type=GEMINI
SUPCOMB (Kozin and Svergun, 2001) https://www.embl-hamburg.de/biosaxs/software.html
UCSF Chimera (Pettersen et al., 2004) https://www.cgl.ucsf.edu/chimera/
FoXS server (Schneidman-Duhovny et al., 2013; Svergun, 1999) https://modbase.compbio.ucsf.edu/foxs/
Phyre2 (Kelley et al., 2015) http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index
Graphpad PRISM https://www.graphpad.com/company/