TABLE 1.
Sample | Raw data | Valid data | Valid ratio (reads) | Q20% | Q30% | GC content% | ||
---|---|---|---|---|---|---|---|---|
Read | Base | Read | Base | |||||
A1 | 101,449,274 | 15.22G | 94,550,880 | 14.18G | 93.20 | 99.74 | 98.48 | 48 |
A2 | 103,736,482 | 15.56G | 98,994,810 | 14.85G | 95.43 | 99.81 | 98.63 | 48 |
A3 | 105,051,744 | 15.76G | 99,167,036 | 14.88G | 94.40 | 99.77 | 98.51 | 48 |
B1 | 102,382,092 | 15.36G | 96,734,688 | 14.51G | 94.48 | 99.76 | 98.47 | 48 |
B2 | 103,267,850 | 15.49G | 97,915,792 | 14.69G | 94.82 | 99.79 | 98.64 | 49 |
B3 | 102,376,260 | 15.36G | 95,384,562 | 14.31G | 93.17 | 99.70 | 98.36 | 47 |
C1 | 105,462,958 | 15.82G | 98,530,172 | 14.78G | 93.43 | 99.70 | 98.34 | 48 |
C2 | 101,700,360 | 15.26G | 95,442,058 | 14.32G | 93.85 | 99.71 | 98.35 | 49 |
C3 | 106,595,358 | 15.99G | 100,597,240 | 15.09G | 94.37 | 99.67 | 98.37 | 47 |
A1, A2, and A3 are 6 months of age; B1, B2, and B3 are 18 months of age; C1, C2, and C3 are 30 months of age; valid ratio (reads) = (valid reads/raw reads).