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. 2021 Mar 31;41(10):1953–1971. doi: 10.1093/treephys/tpab039

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© The Author(s) 2021. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 8. — Comparison of the relation between transcriptome and proteome. (A) Venn diagram showing the number and proportion of DEGs and DEPs within each of the four categories resulting from a relation analysis. The DEGs and DEPs were divided into four combinations: (i) increased transcript level induces protein expression up-regulation (rUP-pUP) (encircled in red), (ii) decreased transcript level induces protein expression up-regulation (rDN-pUP), (iii) increased transcript level induces protein expression down-regulation (rUP-pDN) and (iv) decreased transcript level induces protein expression down-regulation (rDN-pDN) (encircled in blue). We focused on DEGs with correlated expression changes (rUP-pUP (i) and rDN-pDN (iv)), being both transcript and protein level up or down, respectively. (B, C) Kyoto Encyclopedia of Genes and Genomes enrichment of up-regulated (B) and down-regulated (C) genes and proteins.