Table 3.
Recombination events predicted by RDP4 in the full genomes of the 22 APV1 isolates
| Event No. | Recombination | Major parent | Minor parent | Detection methods | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| R | G | B | M | C | S | T | ||||
| 1 | LSGP1–1 | BTZL1 | Unknown (WNLG1) | + | + | – | – | – | – | – |
| 2 | LSGP1–2 | LSGP1–1 | Unknown (WNXL1–2) | – | + | – | + | + | – | + |
| 3 | LSGP1–3 | WNY | LSGP1–1 | – | + | – | – | – | + | + |
| 4 | LSGP1–3 | Unknown (TCFM1) | BTY | + | + | – | – | – | – | – |
| 5 | LSGP1–3 | WNY | BTY | + | + | – | + | + | + | + |
| 6 | LSGP2 | WNXL1–1 | QHZY1 | + | + | – | + | + | – | – |
| 7 | QHDH4 | QHZY1 | QHDH1 | – | – | – | + | + | – | – |
| 8 | QHZY1 | LSGP2 | Unknown (QHDH1) | – | – | – | + | + | – | – |
| 9 | TCFM1 | BTZL1 | WNY | + | – | – | + | + | – | – |
| 10 | WNCF1–1 | WNXL1–1 | Unknown (QHZY1) | – | – | – | + | – | – | + |
| 11 | WNCF1–2 | WNCF1–3 | BTY | + | + | – | + | + | + | + |
| 12 | WNCF1–3 | WNY | LSGP2 | + | + | – | + | + | + | + |
| 13 | WNCF1–3 | Unknown (WNLG1) | WNCF1–1 | + | + | – | + | + | – | – |
| 14 | WNCF1–3 | WNY | WNXL1–1 | + | + | – | + | + | – | – |
| 15 | WNCF1–3 | WNY | WNXL1–1 | + | + | – | + | – | + | – |
| 16 | WNSG1 | LDTT1 | BTZL1 | + | – | – | + | + | – | – |
| 17 | WNXL1–2 | WNY | WNXL1–1 | + | – | – | – | – | + | – |
| 18 | WNXL1–2 | Unknown (TCFM1) | WNXL1–1 | + | + | – | – | – | + | – |
| 19 | WNXL1–2 | Unknown (QHDH1) | WNXL1–1 | + | + | – | – | – | – | – |
| 20 | WNXL1–2 | WNY | LSGP2 | + | + | – | + | + | + | + |