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. 2019 Nov 20;21(6):1875–1885. doi: 10.1093/bib/bbz094

Table 4.

Speedup for different compression techniques. Only the runtime (seconds) for no compression is reported

Model Tools No compression All Dead-end Coupled Coupled Coupled Unique
zero contradicting combine flows
MetaTool <0.01 - - - - - -
E. coli EFMTool 13,129.94 249.88 1.51 1.52 1.57 116.36 313.79
gEFM 1464.60 1.27 1.32 1.33 1.33 1.62 1.62
lrs 26,400.50 23.62 0.83 0.83 0.82 8.92 13.63
MetaTool 0.84 0.99 0.06 0.15 0.07 0.18 1.12
E. coli EFMTool 0.57 3.45 1.80 1.23 1.22 2.89 3.47
(irrev) gEFM - - - - - - -
lrs 177.22 904.17 7.60 5.27 7.60 2.15 496.41
MetaTool 976.03 1.52 0.51 0.53 0.53 3.80 1.26
E. coli EFMTool 38.74 21.32 1.94 1.91 1.97 12.56 21.05
(gluc) gEFM 2.52 1.16 0.94 0.94 0.94 1.14 1.16
lrs 14,364.22 19.14 1.22 1.20 1.22 15.34 19.08