Bacterial and virus strains |
|
|
One Shot Stbl3 E. Coli |
ThermoFisher Scientific |
Cat#C7373 |
Library Efficiency DH5α Competent Cells |
ThermoFisher Scientific |
Cat#18263012 |
Biological samples |
|
|
Healthy human plasma |
Thalacker-Mercer Lab; Gheller et al., 2021
|
N/A |
Chemicals, peptides, and recombinant proteins |
|
|
[U-13C6] Glucose |
Cambridge Isotope Labs |
Cat#CLM-1396 |
[U-13C5] Glutamine |
Cambridge Isotope Labs |
Cat#CLM-1822 |
[2,4-13C2] Citrate |
Cambridge Isotope Labs |
Cat#CLM-148 |
[1,5-14C2] Citrate |
Morovak Inc. |
N/A |
Zinc Chloride |
Sigma-Aldrich |
CAS# 7646-85-7 |
Sodium Citrate |
Sigma-Aldrich |
CAS# 6132-04-3 |
Methoxylamine Hydrochloride |
MP Biomedicals |
Cat#02155405 |
MTBSTFA + 1% TBDMSCl |
Regis Technologies |
Cat#1-270143-200 |
BsmBI |
New England Biolabs |
Cat#R0580L |
Critical commercial assays |
|
|
Lipofectamine 3000 |
ThermoFisher Scientific |
Cat#L3000008 |
KAPA HiFi HotStart Ready Mix |
Kapa Biosystems |
Cat#KK2602 |
iTaq Universal SYBR Green |
Biorad |
Cat#1725121 |
iScript Reverse Transcription Supermix |
Biorad |
Cat#1708840 |
RNeasy Mini Kit |
QIAGEN |
Cat#74104 |
Zero Blunt TOPO PCR Cloning Kit |
ThermoFisher Scientific |
Cat#450245 |
prepGEM gold buffer |
Zygem |
N/A |
Experimental models: Cell lines |
|
|
HepG2 |
ATCC |
Cat#HB-8065 |
Huh7 |
Provided by M. Hermann, MIT, Cambridge, MA, USA |
N/A |
A549 |
ATCC |
Cat#CCL-185 |
143B |
ATCC |
Cat#CRL-8303 |
MCF7 |
ATCC |
Cat#HTB-22 |
HEK293FT |
ThermoFisher Scientific |
Cat#R70007
|
Primary rat cortical neurons |
This paper |
N/A |
Primary rat astrocytes |
This paper |
N/A |
Oligonucleotides |
|
|
See Table S1
|
N/A |
N/A |
Recombinant DNA |
|
|
LentiCRISPR v2 plasmid |
Addgene |
Cat#52961 |
pCMVR8.2 |
Addgene |
Cat#12263 |
pMD2.G |
Addgene |
Cat#12259 |
Software and algorithms |
|
|
MATLAB 2014b and 2016b |
MathWorks |
https://www.mathworks.com/products/matlab.html
|
Escher-Trace |
Kumar et al., 2020
|
https://escher-trace.github.io/
|
GraphPad Prism 7.00 |
GraphPad |
https://www.graphpad.com/scientific-software/prism/
|
INCA 1.5 |
Young, 2014
|
https://mfa.vueinnovations.com/
|
CRISPOR |
Concordet and Haeussler, 2018
|
http://crispor.tefor.net/
|
NCBI BLAST |
Agarwala et al., 2018
|
https://blast.ncbi.nlm.nih.gov/Blast.cgi
|