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. 2021 Oct 9;96:105108. doi: 10.1016/j.meegid.2021.105108

Fig. 2.

Fig. 2

Phylogenetic tree of the entire dataset in collapsed form (rooted). The picture shows the phylogram of the entire dataset resulting from the ML analysis in collapsed form (full resolution image in Supplementary Fig. S1). The six main clusters are shown in different colors: black = unclassified; yellow = SS3; blue = SS2; violet = SS2B; red = SS1; green = SS4 (olive green SS4B, emerald green SS4C, dark green SS4A). The branch representing the central node at the root of the SS4 cluster is labeled by a filled yellow circle (see discussion and Fig. 4). The numbers next to the main nodes represent the output of the aRLT-SH-like analysis. On the right, the main mutations hosted by each cluster and the corresponding classifications according to Yang et al. (2020), Pangolin and Nexstrain nomenclatures are shown. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)